New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4542720	28 (0.870)	8 (0.260)	8/264	2.6	24.5%	noncoding (4542720/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4543016	23 (0.760)					noncoding (4543016/4641682 nt)	repeat_region	repeat region

GTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAA  >  NC_000913_3_vch_tpiA/4542872‑4543155                                                                                                                                                 |                                                                                                                                            gtgGCGCGACACATCTTCCTCAGTCTACTATACAAAAACCACCTCATGCAATATAAACATCTAGAAATAAAGATAACAATAGAATATTAAGCCAACAAAAAAACAAAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggc                                                                                                                                         >  2:11397‑M2/1‑145 (MQ=255)           gCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACATATAAACTTTAAATGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtc                                                                                                                               >  1:22988‑M2/1‑135 (MQ=255)                      aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                    <  1:318202/149‑1 (MQ=255)                          ttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGAGATGCTTTTCTCTATTATTCAAAAtggccccaatacgtctatatttatttgtt                                                                                                                <  2:369489‑M2/149‑30 (MQ=255)                               tcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGACCCAAATGTTTCATCTTTTGGGGGAAAACt                                                                                                           >  2:414055/1‑149 (MQ=255)                               tcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATAAGTCAAAAtggccgcaattgtcttgtatttatttgttttttt                                                                                                           <  1:444329‑M2/149‑35 (MQ=255)                                  aaaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                        <  2:572/149‑1 (MQ=255)                                    aagccgccTCATGCAATATGAACATCGATAAGGAAGGATAACAATAGAAGATTAAGCCAACAAATAAACTGAAAAAGTTTGGCCGCGATGCTTTCCTCTATGAGTCAAGATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa                                                                                                      <  2:98991/143‑1 (MQ=255)                                        caaataatgaaatATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttatt                                                                                                  >  2:444329‑M2/7‑106 (MQ=255)                                              aTGCAATATAAACATCTATAAATAAAGATAAGAATAGAATATTAAGACAACAGATAAACTGAAAAAACTTATCCACGATGCTTTACTATATGAGTAAAAATGGCCCCAAATGGTACATCCTTTGTGGGAAAAGTGAGCAGTGTTGACac                                                                                            >  2:453265/1‑148 (MQ=255)                                              aTGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAAAAAATAAACTAAAAAAGTTTGTCAGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaat                                                                                            <  1:256138‑M2/149‑50 (MQ=255)                                                gCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc                                                                                          >  1:567627/1‑149 (MQ=255)                                                gCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc                                                                                          >  1:319854/1‑149 (MQ=255)                                                     ataAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATTGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                     <  1:212293/149‑1 (MQ=255)                                                         aCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                                                                 >  1:562996/1‑149 (MQ=255)                                                           atgaatcaataaacatAACAATAGAATATTAAGCCAACAAATTAACTTAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTTAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaa                                                                               >  1:480723‑M2/5‑87 (MQ=255)                                                                  aataaaGAGAACAATAGATAATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATTCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTTTTGGCAGTCAAACTCGTTTacaaaaca                                                                        <  2:68917/149‑1 (MQ=255)                                                                                tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCATTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACg                                                          >  1:312316/1‑149 (MQ=255)                                                                                   aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCATCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTGAAACTCGTTTACAAAACAAAGTGTACAGAACGACt                                                       >  2:444988/1‑149 (MQ=255)                                                                                   aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATACTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACt                                                       >  1:410930/1‑149 (MQ=255)                                                                                             caagaaATGAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTGTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTGGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGGCg                                             >  2:279910/1‑149 (MQ=255)                                                                                             caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCg                                             >  2:150730/1‑149 (MQ=255)                                                                                             caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCACAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAAAGAACGACTGCACATGTCg                                             >  1:104788/1‑149 (MQ=255)                                                                                                  aaTAAACTGAAAGAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTa                                        <  2:330042/149‑1 (MQ=255)                                                                                                          gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGt                                >  1:195762/1‑149 (MQ=255)                                                                                                            aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGGCAAAATGGCACCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGGGTTGGCGATCAAACTCGTTTACAAAAAAAAGTGTACAGAACGACTGCCCGTGTCGGTGTTGAAATacatt                              >  2:125209/1‑145 (MQ=255)                                                                                                                gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGAATCACAATATGTAGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTg                          >  1:392585/1‑149 (MQ=255)                                                                                                                   tttCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                       <  2:566538/147‑1 (MQ=255)                                                                                                                       cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                   >  1:331799/1‑149 (MQ=255)                                                                                                                           aTGCCTGCCTCTCTGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaatcctcttctctttttaatttttcgtttatgagattatttctttcccataatccggcaaaacgagc               >  2:388371‑M2/1‑23 (MQ=255)                                                                                                                                  ccTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataatttaaatcaaacctcttctctttttaatttttcgtttatgagattatttctttcccataatccggcaaaacgagcagcatta        >  1:173919‑M2/1‑16 (MQ=255)                                                                                                                                        tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACATAACGACTGTCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaa  <  1:240193/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                            GTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAA  >  NC_000913_3_vch_tpiA/4542872‑4543155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.