New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	4559149 =	21 (0.840)	3 (0.130)	3/274	3.3	13.0%	noncoding (4559149/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	4559173 =	20 (0.840)					noncoding (4559173/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGATAAACGTCCGGTGCGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGG  >  NC_000913_3_vch_tpiA/4559026‑4559318                                                                                                                                                    |                                                                                                                                                  gTGATAAACGTCCGGTGCGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGa                                                                                                                                                  >  1:332215/1‑149 (MQ=255)  gggtgaaCGTCCGGTGCGGCGGAAGGGTGATCAGAGATGGCGCATTTCACGACAATCACACGATCGATACTCGCCTCGTCTTTTTCCGCGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGAt                                                                                                                                                 <  2:70687/144‑1 (MQ=255)           tcaggggCGGCAGAGCGGTGGTCAGGGATGGCGCGTTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCATGGACCCCGGAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGGTGCctacttg                                                                                                                                        <  2:75150/143‑2 (MQ=255)                 gcgcCAGAACGGTGATCACAGATGGCGCATTTCCCGCGAATGACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCTAGGGCCGTATGCCTTCTTCATTGAg                                                                                                                                  <  2:248729/149‑1 (MQ=255)                  cGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATTACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAgc                                                                                                                                 <  1:396010/149‑1 (MQ=255)                   ggCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGACGCCTTCTTCATTGAgcg                                                                                                                                >  2:414184/1‑149 (MQ=255)                    gCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAgcgc                                                                                                                               >  2:116859/1‑149 (MQ=255)                                           gcATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGAACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGAtt                                                                                                        >  1:125222/1‑149 (MQ=255)                                               ttCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGCGATTCCgg                                                                                                    >  1:259314/1‑149 (MQ=255)                                                 cACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGt                                                                                                  >  1:424822/1‑149 (MQ=255)                                                                    atAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGGGAGATAGAGTCTGt                                                                               >  2:167201/1‑149 (MQ=255)                                                                         cGCCAAGTCTTGTTCCACTGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCca                                                                          <  1:408954/149‑1 (MQ=255)                                                                          gCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCCAGAGATAGAGTCGGTGCCcag                                                                         >  2:391146/1‑149 (MQ=255)                                                                                        cACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACtg                                                           >  1:53326/1‑149 (MQ=255)                                                                                                ccGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTATTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAAATAGAGTAGGTGCCAAGCAGACAAACCACttacgtgacg                                                   >  1:194968/1‑149 (MQ=255)                                                                                                              gAAGGGACATGATAAGCGCCGGTCAGCGTCCTGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAg                                     >  1:215518/1‑149 (MQ=255)                                                                                                                      aTGATCAGCGCCGGTCAAGATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTa                             <  2:18650/149‑1 (MQ=255)                                                                                                                             gcgcCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCCGACCAACCACTGACGTGCCGCCCGCTTCCGTCACGCGACTTAGCGCCAc                      >  2:339361/1‑149 (MQ=255)                                                                                                                                ccGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAACGCACGGGTCTTGGCGAGCAGGGAATTTGGTTAGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTc                   >  1:413241/1‑149 (MQ=255)                                                                                                                                            cAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGCTAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGcgt       >  1:175691/1‑149 (MQ=255)                                                                                                                                             aGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGcgtc      >  2:396422/1‑149 (MQ=255)                                                                                                                                                cgcTGATGCCTTTTTCATTGAGCGCACGGGTCTTGGCGAGCGGGGCTTCCGGGTGGCGAGGTATAGAGTCGGTGCCCAGCAGACCACCCACTGACGTGACGCCCGCTTTCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTg   <  2:159240/149‑1 (MQ=255)                                                                                                                                                cgcTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCGCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTg   <  1:396422/149‑1 (MQ=255)                                                                                                                                                 gcTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTgg  <  2:413241/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GTGATAAACGTCCGGTGCGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGG  >  NC_000913_3_vch_tpiA/4559026‑4559318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.