New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3674455	NA (NA)	4 (0.170)	4/276	2.9	NA	noncoding (75/93 nt)	REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_vch_tpiA	= 3674459	NA (NA)					noncoding (79/93 nt)	REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences

CACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATATAAATCCAGTTGGTAACTTTTATTTAAC  >  NC_000913_3_vch_tpiA/3674324‑3674599                                                                                                                                        |                                                                                                                                             cACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCga                                                                                                                                 >  1:158260/1‑148 (MQ=255)    cgtcgAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCACATCCGGAta                                                                                                                              <  1:109780/146‑1 (MQ=255)                    gacCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATCCGCCAGCAACGAATCAGGCTATAATCCTCACATAAcc                                                                                                              >  1:205581/1‑149 (MQ=39)                     acCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACct                                                                                                             <  1:271828/149‑1 (MQ=255)                             aTGCCGGGGAAATCGCAGCCTTATGATAGGCGGGATGCGGCGTAAACGCCTTATCCGGTATACGATTTTATTCGGACTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAAc                                                                                                     <  1:15859/149‑1 (MQ=39)                                          cGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATACGCACATAACCTCTTGAAACCCGTCCCCaaacc                                                                                        >  2:120482/1‑145 (MQ=255)                                                    aaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAACCTCGTCCCCAGAGCCTCTTCAGcc                                                                              <  2:151196/149‑1 (MQ=255)                                                     aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCa                                                                             >  2:285297/1‑149 (MQ=255)                                                              gaggcggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTgg                                                                    <  2:141778/146‑1 (MQ=255)                                                                                                         cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatcttatccggcctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccgg                                                                    <  1:120234‑M2/106‑75 (MQ=255)                                                                                                         cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatcttatccggcctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccgg                                                                    >  2:120234‑M2/1‑32 (MQ=255)                                                                                                         cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTACATTCCAACTCATAACCCCAGCATATAAAt                         >  2:216636/1‑149 (MQ=255)                                                                                                            gCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATATAAATCCa                      <  1:285297/149‑1 (MQ=255)                                                                                                                cccGTAGGCCGGATAAGATGCGCCAgcatcgcatccggcctacggggagccaagccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcgggtcgtctttatctt                  <  2:413748‑M2/149‑125 (MQ=255)                                                                                                                            aTAAGATGCGCCAgcatcgcatccggcctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcgggtcgtcgttatattcggcggtggcaa      <  1:422775‑M2/149‑137 (MQ=255)                                                                                                                                gATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTTAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATATAAATCCATTTGGTAACTTTTATTTAAc  >  2:149984/1‑149 (MQ=255)                                                                                                                                        |                                                                                                                                             CACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATATAAATCCAGTTGGTAACTTTTATTTAAC  >  NC_000913_3_vch_tpiA/3674324‑3674599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.