New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2920036 =	21 (0.840)	4 (0.170)	4/272	2.9	16.3%	noncoding (2920036/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2920054 =	21 (0.890)					noncoding (2920054/4641682 nt)	repeat_region	repeat region
Rejected: Frequency below/above cutoff threshold.

AAATTCCGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGCACAACGGCTTCGCTGT  >  NC_000913_3_vch_tpiA/2919916‑2920199                                                                                                                                           |                                                                                                                                                  aaaTTCCGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCAt                                                                                                                                         >  1:326614/1‑149 (MQ=255)       cGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCTGCATAGGTAAGAACATTATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGa                                                                                                                                   <  1:12163/149‑1 (MQ=255)               cTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTCAGAACATCCTTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTttc                                                                                                                           <  1:202629/149‑1 (MQ=255)                    cGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCaa                                                                                                                      <  2:326614/149‑1 (MQ=255)                      tCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATg                                                                                                                    >  2:411995/1‑149 (MQ=255)                         ggAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCAc                                                                                                                 >  1:389107/1‑149 (MQ=255)                         ggAGAAGCCCTGTTCTGCGCAGCATGGATCTTCGGCATGGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATAAAGCAGCCATGCACCGATGTGCTTAACGTTAATCTGCGCATCCGGACAGCGTTTCTTCAATacac                                                                                                                 >  2:393054/1‑149 (MQ=255)                                cccTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAgt                                                                                                          >  2:283525/1‑149 (MQ=255)                                  cTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAgtgt                                                                                                        <  2:393955/149‑1 (MQ=255)                                   tGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTc                                                                                                       >  1:302947/1‑149 (MQ=255)                                      aacttaagggcggcgtgttacctggcgagcaagaaatcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattACCGTTGGGATCAACGGTAATc                                                                                                                                                <  1:184039‑M1/22‑1 (MQ=255)                                      aacttaagggcggcgtgttacctggcgagcaagaaatcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattACCGTTGGGATCAACGGTAATc                                                                                                                                                >  2:184039‑M1/84‑105 (MQ=255)                                                   gATCTTCGGCATATGTTAGTACATCATTCAGCTTTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCa                                                                                       <  1:196601/149‑1 (MQ=255)                                                                  tAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGccc                                                                        <  1:283525/149‑1 (MQ=255)                                                                    aGAACATCATTCAGCCTATTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCtt                                                                      <  2:344944/149‑1 (MQ=255)                                                                          tcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattACCGTTGGGATCAACGGTAATCCGCGCATCCGGGa                                                                                                                                   <  1:362654‑M1/35‑1 (MQ=255)                                                                          tcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattACCGTTGGGATCAACGGTAATCCGCGCATCCGGGa                                                                                                                                   >  2:362654‑M1/48‑82 (MQ=255)                                                                          tcatTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGc                                                                                                                                <  1:395213/85‑1 (MQ=255)                                                                          tcatTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGc                                                                                                                                >  2:395213/1‑85 (MQ=255)                                                                            atTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGCTAACACGCCGCCCTTAAGTTTGa                                                              >  2:32134/1‑149 (MQ=255)                                                                               cAGCCCTTTGCATAAAGAACTGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGAGTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGaaag                                                           >  2:380848/1‑148 (MQ=255)                                                                                           tAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGt                                               >  2:81641/1‑149 (MQ=255)                                                                                                      cTTCATCAAGCAGCCATGCACCGTTGGGCTCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCtgt                                    >  2:205491/1‑149 (MQ=255)                                                                                                        tcccggatgcgcggattaccgttgatcccaacggtAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGa                                                                                                     <  1:362654‑M2/47‑1 (MQ=255)                                                                                                        tcccggatgcgcggattaccgttgatcccaacggtAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGa                                                                                                     >  2:362654‑M2/36‑82 (MQ=255)                                                                                                               gcagcCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTcc                           <  2:302947/149‑1 (MQ=255)                                                                                                                     gattaccgttgatcccaacggtAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGtt                                                                 >  2:184039‑M2/23‑105 (MQ=255)                                                                                                                     gattaccgttgatcccaacggtAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGtt                                                                 <  1:184039‑M2/83‑1 (MQ=255)                                                                                                                             TTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCGTCCGCCAGACGCACAAc             <  1:349658‑M1/149‑1 (MQ=255)                                                                                                                              TGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGCACAACg            >  1:205491‑M1/1‑149 (MQ=255)                                                                                                                                   tCAACGGTAATCCGCGTATCCGGGAAGGGTGTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTCACAGGCCGCCCTTAGGTTTGAAATCTTTCAAGACGTAGCGATCCTGTGAGCATTCCGCCAGGCGGACAACGGCTTc       >  2:150416/1‑149 (MQ=255)                                                                                                                                   gcaacggtAATGCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGCACAACGGCTTc       <  2:208644‑M2/141‑1 (MQ=255)                                                                                                                                        ggtAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCTATCCTGTGAGGCTTCCGCCAGACGCACAACGACTTCGCTGt  >  1:252213‑M2/4‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                  AAATTCCGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGCACAACGGCTTCGCTGT  >  NC_000913_3_vch_tpiA/2919916‑2920199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.