| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 3071319 = | 22 (0.880) | 4 (0.170) | 4/274 | 2.9 | 17.0% | noncoding (3071319/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3071351 = | 18 (0.750) | noncoding (3071351/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCC > NC_000913_3_vch_tpiA/3071172‑3071449 | cctgcagtagcgatgctcgaagagcgcgctaagaagtaaaaaatcacagggcagggaaacctgcccttgtttcagcgcgcttttagagcacgcaatttttcatactctaaataattcgagttgcaggaaggcgacaagagagtgaatcc > 2:326727‑M1/148‑149 (MQ=255)cctgcagtagcgatgctcgaagagcgcgctaagaagtaaaaaatcacagggcagggaaacctgcccttgtttcagcgcgcttttagagcacgcaaattttcataaaacacataagccgagttgcaggaaggcgacaagagagtgaatcc < 1:120384‑M1/2‑1 (MQ=255)cctgcagtagcgatgctcgaagagcgcgctaagaagtaaaaaatcacagggcagggaaacctgcccttgtttcagcgcgcttctagagcacgcaatttttcatactctaaatacttcgggttccagcgagncgacacgagagtgaatcc < 1:268576‑M1/2‑1 (MQ=255) ggAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTc > 2:428599/1‑149 (MQ=255) ttGTATGTCATCACCAGTAATTTCTCCATGTTTTACTAATTTCAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCTGGCCTTATTCTCGTCATCCTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTAt < 1:289865/148‑1 (MQ=21) cTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTAt < 1:262571/149‑1 (MQ=255) gTACCTCATTACCAGTGATTACGCCAGGTTTTACGAAATTAAATTTCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCGTAGACTCGGCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGt < 1:11068/149‑1 (MQ=25) gTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTCCTCCGTCCGCGTTCCCCCACCCCCGCCCCCTCCCTATGTAAGc > 2:138013/1‑149 (MQ=37) aCCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTAt < 1:11753/137‑1 (MQ=255) aCCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTAt > 2:11753/1‑137 (MQ=255) aCCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTgg < 1:377967/149‑1 (MQ=255) taagtagtaaaaaatcacggggcaggaaaaccttcccttgtttcagcgcgcttttagtacacgcaatttttcataatctaaataattcgagttgcaggaaggcgacaagagagtgaatCCCCAGTCACTTACTTATGTAAGCTCCTggg > 2:99968‑M1/119‑149 (MQ=255) gCCAGGTTTTACGAAGTCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCACTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCActctc > 1:161218/1‑149 (MQ=255) gCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGTATTCActctc > 1:318580/1‑149 (MQ=255) acagggcagggaaacctgcccttgtttcagcgcgcttttagagcacgcaatttttcatactctaaataattcgagttgcaggaaggcgacaagagagtgaatCCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTc > 1:64319‑M1/103‑149 (MQ=255) gcagggaaacctgcccttgtttcagcgcgcttttagagcacgcaatttttcatactctaaataattcgagttgcaggaaggcgacaagagagtgaatCCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCa < 1:395444‑M1/37‑1 (MQ=255) gcagggaaacctgcccttgtttcagcgcgcttttagagcacgcaatttttcatactctaaataattcgagttgcaggaaggcgacaagagagtgaatCCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCa > 2:395444‑M1/98‑134 (MQ=255) aaaTCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTc > 2:120384/1‑149 (MQ=255) aaaTCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTc < 2:129725/149‑1 (MQ=255) ccTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTaaa > 2:235154/1‑149 (MQ=255) ttATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTACTCaaaatt > 2:309745/1‑147 (MQ=255) taCTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATCTAAAGTATGAAAAATTGCATACCCAAAAAgcac > 1:201496/1‑147 (MQ=14) gTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTAGTTCTGTAAACTCCTGGGGATTCACTGTCTTGTCGCCTTCCTGCAACTCGAATTATTTATAGTATGAAAAATTGCGTGCTATAAAAGCGAGCTGa > 1:14479/1‑149 (MQ=17) ttCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGCATGAAAAATTGCGTGCCCTCACAGCGCCCTGACACACgg > 2:268576/1‑149 (MQ=14) gaaGTTGTATGTGCTGCGTCTTCGTTCGCTTCACCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTTTCTTGTCGCCTTCCTGCGACTCGTATTATTTAGATTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGc < 2:85751/148‑1 (MQ=18) ttGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGt > 1:121381/1‑149 (MQ=255) aTGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTcc > 1:61301/1‑149 (MQ=255) gctgcGTCTGCGTTCGCCCACCCCAGTCACTTACTAACGTAAGCTCCAGGGGATTCACTATCTTGTCGCCTTCCTGCAACCCGAATTATTTAGAGAATGAAAAATGACGGGACCTACCAACACCCTGAAACAAGTGCAGGATTccgtgc > 2:275837/1‑149 (MQ=255) tgcgtctgcgtTCGCTCACCCCAGTCACTTTTCTAAGCTACCTCGTGGGTATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTccctgccc < 2:201496/149‑1 (MQ=21) | CTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTCGGGCCTTATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCC > NC_000913_3_vch_tpiA/3071172‑3071449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |