| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 1096961 = | 13 (0.520) | 4 (0.240) +GGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTT |
3/192 | 2.4 | 31.5% | noncoding (1096961/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 1097243 = | NA (NA) | noncoding (1097243/4641682 nt) | repeat_region | repeat region | |||||
TTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGT > NC_000913_3_vch_tpiA/1096818‑1097104 | tttAATAAGTGGGGAAGTGATAGGAAGTGATCAGATAATACATTTCTGTTCTGTACGCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGgt < 1:320738/149‑1 (MQ=255)ttcaataaGTAAGCAAGTTATAACAAGTGACCAAATAATACATATATGTTCTGTATTCTCTTGCGCATTTTGATTGTTGACTGATTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGgt < 1:90737/146‑1 (MQ=255) gAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAg > 1:41868/1‑149 (MQ=255) ccAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTAc > 1:358851/1‑149 (MQ=255) aGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCggtctt > 2:354230/1‑144 (MQ=255) ataataCATATATGTTCTGTACTCTCTTGCGTATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTc < 1:294890/149‑1 (MQ=255) gTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGAtcttc > 2:174159/1‑149 (MQ=255) agttggacagaccgtgaacgcagtgagcgggctgcccaactggctgtcgccagttgtcgaaccccggtcggggcttctcatcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt > 2:84014‑M1/85‑140 (MQ=255) agttggacagaccgtgaacgcagtgagcgggctgcccaactggctgtcgccagttgtcgaaccccggtcggggcttctcatcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt < 1:84014‑M1/56‑1 (MQ=255) agaccgtgaacgcagtgagcgggctgtccaactggctgtcgccagttgtcgaaccccggtcggggcttctcatcccCCCGGTGTGTGCAATATACGAAAAAAAAACCCGTACTTTCGTACGAGCTCTTTTTTACATATGGCGGTAagga < 1:286941‑M1/73‑2 (MQ=255) ccAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACAAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGGTTGACTTGCTgctctc > 2:39761/1‑149 (MQ=21) caactggcggcagccagttgtcgaaccccggtcggggcttctcatcccCCCGGTGTGTGCAAtata > 2:226255‑M1/49‑66 (MQ=255) aactgtctgccgctagttgtcaaaccccggtcggggcttctcatcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg > 1:24223‑M1/48‑149 (MQ=255) tgtgCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGGTTCGCTCGCCCTGCGGGCa > 1:149392/1‑149 (MQ=255) cACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAATCACATGCCACGCCCAGCGAGCAAcca > 1:374056/1‑148 (MQ=18) tCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTCCGAACAGCCCGCTccat > 1:178770/1‑146 (MQ=255) gtcgaaccccggtcgaggcttctcatcccTCCGGTGTGTGCAATATACGAAAAATAAGCCCATACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGCGGGGGGGCGTGACTCGCTTCGCTCGCACTGCGGGCAGcccgctccattcg < 1:371327‑M1/120‑7 (MQ=255) gaaccccggtcggggcttctcatcccCCCGGTGTGTGCAAtata > 1:73772‑M1/27‑44 (MQ=255) gaaccccggtcggggcttctcatcccCCCGGTGTGTGCAAtata < 2:73772‑M1/18‑1 (MQ=255) gaaccccggtcggggcttctcatcccCCCGGTGTGTGCAATATACGaaaaaaaa > 1:434323‑M1/27‑54 (MQ=255) accccgttcggggctgtccagcccCCGGGTGTTTTAAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTCTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCAc > 2:409543‑M1/25‑149 (MQ=255) tcggggcttctcatcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGt < 2:268677‑M1/121‑1 (MQ=255) tcggggcttctcatcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGt > 1:268677‑M1/18‑138 (MQ=255) aCGTTGGCGGGGGCACCCGGTTTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTcc < 2:64068/149‑1 (MQ=255) ggcttctcatcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg > 2:313757‑M1/14‑77 (MQ=255) ggcttctcatcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg < 1:313757‑M1/64‑1 (MQ=255) gtgCACCCTGTGTGTGCAATATACGAAAAAAAAGTTCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGcgac < 1:25643/147‑4 (MQ=11) atcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa > 2:110365‑M1/6‑64 (MQ=255) atcccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa < 1:110365‑M1/59‑1 (MQ=255) cccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa < 1:395426‑M1/59‑1 (MQ=255) cccCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa > 2:395426‑M1/4‑62 (MQ=255) | TTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGT > NC_000913_3_vch_tpiA/1096818‑1097104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |