| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 357490 | 24 (0.960) | 4 (0.170) | 4/272 | 2.9 | 13.6% | noncoding (7/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_vch_tpiA | = 357506 | 28 (1.180) | noncoding (23/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTCCGGTACGTTATTCGGTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCAT > NC_000913_3_vch_tpiA/357347‑357638 | gTTCCGGTACGTTATTCGGTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcggc > 2:75160/1‑149 (MQ=255) tATTCGGTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTTGAGCAGCCAGAAGCCATCGATTACAAACGTTGACCGACTGGGTTACAGCGAGCTTAGTTTATTCCGGGTGCCGCGTCAACACCTTa < 2:131624‑M2/149‑2 (MQ=255) gTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAAAGCCTTatccggc < 1:309957‑M2/149‑8 (MQ=255) gTGGCGGCACGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc > 2:104737/1‑149 (MQ=255) ggcgccAAGGTGATTGCCAGCACAGAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGt < 1:250277/149‑1 (MQ=255) aaGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATaaggcgttcacgccgcatccg > 1:218866‑M1/1‑114 (MQ=255) aaGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATaaggcgttcacgccgcatccg < 2:218866‑M1/135‑22 (MQ=255) gTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGAATGCGGCGTGAACGCCTTAACCGGACTACGTAGAGCACTg > 1:65091/1‑149 (MQ=255) gATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGaa < 2:2652/149‑1 (MQ=255) cAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTCAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTa > 1:339991/1‑149 (MQ=255) aGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTCCGTAGAGCACTGAACTCATAg > 2:10827/1‑149 (MQ=255) gCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATaaggcgttcacgccgcatccggcataaa < 2:105318‑M1/118‑29 (MQ=255) gCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATaaggcgttcacgccgcatccggcataaa > 1:105318‑M1/1‑90 (MQ=255) accaccGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAgcgc > 1:373935/1‑149 (MQ=255) caccGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCAt > 2:278846/1‑149 (MQ=255) caccGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCAt > 2:278812/1‑149 (MQ=255) accGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGTACTCGTAGGCCTGATAAACGTATCGCATc > 2:103804/1‑149 (MQ=255) accGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATc < 1:278812/149‑1 (MQ=255) accGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATc < 1:278846/149‑1 (MQ=255) agcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGc < 2:29393/149‑1 (MQ=255) aaaCGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTa > 1:197004/1‑106 (MQ=255) aaaCGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTa < 2:197004/106‑1 (MQ=255) gTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAAAGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTg > 1:4850/1‑149 (MQ=255) ttGGACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTTGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 2:394233/149‑1 (MQ=255) tGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCGGAGCTCTGCCCTCGGCTACCGTGATTCCTTccc > 2:212001/1‑149 (MQ=14) cTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCgcgc > 1:364909/1‑149 (MQ=38) ttAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCa > 2:167001/1‑149 (MQ=38) tttATGCCGGATGCGGCGTGAACGCCTTatccggcataaactaagctcgctgtaacccagtcgttcaacgtttgtaatcgatggcttctggctgctccagatatacggtggtttgtgc < 2:105318‑M2/118‑91 (MQ=255) tttATGCCGGATGCGGCGTGAACGCCTTatccggcataaactaagctcgctgtaacccagtcgttcaacgtttgtaatcgatggcttctggctgctccagatatacggtggtttgtgc > 1:105318‑M2/1‑28 (MQ=255) gCCGGATaaggctttcacgccgcatccggcataaactaagctcgctgtaacccagtcgttcaacgtttgtaatcgatggcttctggctgctccagatatacggtggtttgtgccggttgtgtgctggcaatcaccttgccgccacgtac < 1:309957‑M1/149‑143 (MQ=255) gCCGGATGCGGTGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCaa < 1:98565/149‑1 (MQ=255) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCaa < 1:321031/149‑1 (MQ=255) ccGGATGCGGCGTGAACGCCTTATCCGGCTCACGTCGGGCATGGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAAc < 1:230078/149‑1 (MQ=14) cGGATGCGGCGTGAACGCCTTatccggcataaactaagctcgctgtaacccagtcgttcaacgtttgtaatcgatggcttctggctgctccagatatacggtggtttgtgccggttgtgtgctggcaatcacctt < 2:218866‑M2/135‑115 (MQ=255) cGGATGCGGCGTGAACGCCTTatccggcataaactaagctcgctgtaacccagtcgttcaacgtttgtaatcgatggcttctggctgctccagatatacggtggtttgtgccggttgtgtgctggcaatcacctt > 1:218866‑M2/1‑21 (MQ=255) taaggtgttgacgcggcacccggaataaactaagctcgctgtaacccagtcggtcaacgtttgtaatcgatggcttctggctgctcaagatatacggtggtttgtgccggttgtgtgctggcaatcaccttgccgccacgtaccgaata < 2:131624‑M1/149‑149 (MQ=255) | GTTCCGGTACGTTATTCGGTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCAT > NC_000913_3_vch_tpiA/357347‑357638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |