New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	103908 =	18 (0.720)	4 (0.170)	4/274	2.9	19.9%	noncoding (103908/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	103936 =	15 (0.630)					noncoding (103936/4641682 nt)	repeat_region	repeat region
Rejected: Frequency below/above cutoff threshold.

TGAATAACGATATTAAGCTCAATCTTGGCCGGGGCGATACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCAGCAACAAAATCAGGCACAGGCAGAACAACAATGATCAAGGCGACGGACAGAAAACTGGTAGTAGGACTGGAGATTGGTACCGCGAAGGTTGCCGCTTTAGTAGG  >  NC_000913_3_vch_tpiA/103762‑104055                                                                                                                                                   |                                                                                                                                                    tGAATAACGATATTAAGCTCAATCTTGGCCGGGGCGATACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCg                                                                                                                                                   <  1:438504/149‑1 (MQ=255) gcagcatagcgtcgggcagaagttcccctactcaagcggcaaccttcgcggtaccaatctgcagtcctgctaccagttttctggtcgtcgtctggatcattgttgttctgcctgtgcctgattttgttgctgagtagatgcctctggcg                                                                                                                                                   >  2:218726‑M1/147‑149 (MQ=255)        cGATATTAAGCTCAATCTTGGCCGGGGCGATACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAg                                                                                                                                            >  2:13761/1‑149 (MQ=255)         gATATTAAGCTCAATCTTGGCCGGGGCGATACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGAACACCCGATTAGCTACGTTGATTTGCGTAATGACTCTAGAGCGGAAGTAgg                                                                                                                                           >  1:301409/1‑149 (MQ=255)               aaGCTCAATCTTGGCCGGGGCGATACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGgc                                                                                                                                     <  2:318323/149‑1 (MQ=255)                    aacctgtGGCCGGGTC‑ATAAGATGAAACGTTTGGCTCGCTTTGTAGAACCTTTTCCGGTTTTACAGCAGCAGGCGCAAACCGATGGTAAATGGATTAGCTACGTTGATTTGCTTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCtt                                                                                                                               <  2:339816/143‑1 (MQ=255)                            ctacttatgcgtcaaccttcacggtaccaatctccagtcctactaccaggtttctgtccgtcgccttgatcattgttgttctgcctgtgcctgattttgttgctgagtagattcctctgGCGGCAGTAGGCTGGGCGCCCTTGCCGCCa                                                                                                                        >  1:69648‑M1/120‑149 (MQ=255)                              actaaagcggcaaccttcgcggtaccaatctccagtcctactaccagttttctgtccgtcgccttgatcattgttgttctgcctgtgcctgattttgttgctgagtagattcctctgGCGGCAGTAGGCTGGGCGCCCTTGCCGCCaga                                                                                                                      >  1:15501‑M1/118‑149 (MQ=255)                                    gATACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGCTGGCACACGGATTAGCTACGTTGATTTGCGTTATGACTCAGGAGCAGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGaaac                                                                                                                >  1:170780/1‑147 (MQ=255)                                      tACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTACGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAAACTa                                                                                                              >  1:321418/1‑149 (MQ=255)                                          aTGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCa                                                                                                          <  1:13761/149‑1 (MQ=255)                                                     ggCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCAGCAACAAAATc                                                                                               <  2:35864/149‑1 (MQ=255)                                                        tCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCAGCAACAAAATcagg                                                                                            >  1:347045/1‑149 (MQ=255)                                                                         aTCCGGTTTTACAGCAGCAGGTGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCAGCAACAAAATCAGGCACAGGCAGAAcaacaa                                                                           <  1:167410/149‑1 (MQ=255)                                                                                 ttACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCTAGAGGAATCTACTCAGCAACAAAATCAGGCACAGGCAGAACAACAATGATCAAg                                                                   >  2:332393/1‑149 (MQ=255)                                                                                     agcagcagGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTg                                                                                                                                        <  1:351211/76‑1 (MQ=255)                                                                                     agcagcagGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTg                                                                                                                                        >  2:351211/1‑76 (MQ=255)                                                                                            cttgatcattgttgttctgcctgtgcctgattttgttgctgagtagattcctctgGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAAt                                                                                                                 <  1:321467‑M1/37‑1 (MQ=255)                                                                                            cttgatcattgttgttctgcctgtgcctgattttgttgctgagtagattcctctgGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAAt                                                                                                                 >  2:321467‑M1/56‑92 (MQ=255)                                                                                             gcgcAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGAAATCTACTCAGCAACAAAATCATGCACAGGCAGAACAACAATGATCAAGGCGACGGACAGa                                                       >  2:42759/1‑149 (MQ=255)                                                                                                     cGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCTGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCAGCAACAAAATCAGGCACAGGCAGAACAACAATGATCAAGGCGACGGACAGAAAACTGgt                                               <  1:47169/149‑1 (MQ=255)                                                                                                                          cGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCAGCAACAAAATCAGGCACAGGCAGAACAACAATGATCAAGGCGACGGACAGAAAACTGGTAGTAGGACTGGAGATTGGTAc                          >  2:21477/1‑149 (MQ=255)                                                                                                                                                  aGCGGCAGTAGGCTGGGCGCCTTTGCCGCCAGAGGAATCTACTCAGCAACAAAATCAGGCACAGGCAGAACAACAATGATCAAGGCGACGGACAGAAAACTGGTAGTAGGACTGGAGATTGGTACCGCGAAGGTTGCCGCTTTAGTAgg  <  1:219242/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGAATAACGATATTAAGCTCAATCTTGGCCGGGGCGATACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCAGCAACAAAATCAGGCACAGGCAGAACAACAATGATCAAGGCGACGGACAGAAAACTGGTAGTAGGACTGGAGATTGGTACCGCGAAGGTTGCCGCTTTAGTAGG  >  NC_000913_3_vch_tpiA/103762‑104055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.