| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 2768828 | 20 (0.800) | 4 (0.170) | 4/274 | 2.9 | 15.6% | noncoding (12872/22030 nt) | cryptic prophage CP4‑57 | cryptic prophage CP4‑57 |
| ? | NC_000913_3_vch_tpiA | = 2768848 | 24 (1.010) | noncoding (12892/22030 nt) | cryptic prophage CP4‑57 | cryptic prophage CP4‑57 | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_vch_tpiA/2768679‑2768828‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgga‑AGCCTTCCCGCTGCAGGCTGTCCAGCAGGGAAATTGTGGGTATATACGTGTAGCGTTCACTGCGGGATTCGTGTTTATCCTCACTGAATACGCTGGGCACCACGCGAAATAACTCTTCACGGGTTAACGGACGGTCACGGCGAATAA < NC_000913_3_vch_tpiA/2768848‑2768702 ttgGCGCTTTAAGGCTTCAAATCTGATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGGTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAGCACGAATCCCGCGGTGAACGCGACCCGTATCTACCAACAAGTTCCCTGCTGa > 2:215195/4‑148 TATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTTCCCGCTGCAGGCTG > 1:195812/1‑91 TATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTTCCCGCTGCAGGCTG < 2:195812/91‑1 CGCAGTGAACGCTACACGTCTATACCCACAATTTCCCTGCTGGA‑AGCCTTCCCGCTGCAGGCTGTCCAGCA > 1:7067/1‑71 CGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGA‑AGCCTTCCCGCTGCAGGCTGTCCAGCA < 2:7067/71‑1 CTGGA‑AGCCTTCCCGCTGCAGGCTGTCCAGCAGGGAAATTGTGGGTATATACGTGTAGCGTTCACTGCGGGAATCGTGTTTATCCTCACTGAATACGCTGGGCACCACGCGAAATAACTCTACACGGGATAACGGACGGTCACGGCGAc > 2:7549/1‑148 GA‑AGCCTTCCCGCTGCAGGCTGTCCAGCTGGGAAATTGTGGGTATATACGTGTAGCGTTCACTGCGGGATTCGTGTTTATCCTCACTGAATACGCTGGGCACCACGCGAAATAACTCATAACGGGTTAACGGACGGTCACGGCGAAcga < 2:185179/149‑4 TTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_vch_tpiA/2768679‑2768828‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgga‑AGCCTTCCCGCTGCAGGCTGTCCAGCAGGGAAATTGTGGGTATATACGTGTAGCGTTCACTGCGGGATTCGTGTTTATCCTCACTGAATACGCTGGGCACCACGCGAAATAACTCTTCACGGGTTAACGGACGGTCACGGCGAATAA < NC_000913_3_vch_tpiA/2768848‑2768702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |