New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2729630 =	NA (NA)	5 (0.160)	5/274	3.7	NA	noncoding (2729630/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2729652 =	NA (NA)					noncoding (2729652/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.

AGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGG  >  NC_000913_3_vch_tpiA/2729508‑2729710                                                                                                                                                 |                                                           aGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTGATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCtt                                                        <  1:505093/149‑1 (MQ=38) aGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCtt                                                        <  2:285829/149‑1 (MQ=255)  gCGACCCGCCTTATTCTCCTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAATTTTCATCAGACAATCTGTCTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTg                                                       <  1:324227/149‑1 (MQ=14)                           gcACTCCCAACGCGTAAACGCCTTGCGATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCTCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAAt                              <  1:124946/148‑1 (MQ=255)                                 ccAACGGGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAATGACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACTGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaaa                        <  2:213949/149‑1 (MQ=255)                                  cAACGCGTAAGCGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCCTCAATCACaacg                       >  2:324074/1‑147 (MQ=255)                                    aCGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg                     <  1:240228/149‑1 (MQ=40)                                                       ttCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAgg  >  2:555945/1‑149 (MQ=33)                                                                                                                                                 |                                                           AGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGG  >  NC_000913_3_vch_tpiA/2729508‑2729710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.