New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_vch_tpiA | 4090599 = | 26 (0.800) | 5 (0.160) | 5/274 | 3.7 | 14.1% | noncoding (4090599/4641682 nt) | repeat_region | repeat region |
? | NC_000913_3_vch_tpiA | 4090628 = | 36 (1.150) | noncoding (4090628/4641682 nt) | repeat_region | repeat region | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
ACCAATTTCCACGCCGCGCTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGT > NC_000913_3_vch_tpiA/4090470‑4090746 | aCCAATTTCCACGCCGCGCTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTc > 2:35758/1‑149 (MQ=255) aCGCCGCGCTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTCACGCATGAGGCGCGACGGAACCAATCACACCAGGAATTTTAACTCCCTtgttggt > 1:168627/1‑145 (MQ=255) aCGCCGCGCTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGCCGGAACCAATCACACCAGGGATTTTCACTCCCTtgtgtgt > 1:168630/1‑149 (MQ=255) cgcTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTAt < 2:137800/149‑1 (MQ=255) ccACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTAcc < 1:35758/149‑1 (MQ=255) gcccgACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTGTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGtt < 2:169527/146‑1 (MQ=255) gctaCTGTTCGCGCCAATATCAATGAACATCTCTTCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGa < 2:513230/146‑1 (MQ=255) gACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGc > 1:361497/1‑126 (MQ=255) gACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGc < 2:361497/126‑1 (MQ=255) tGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGCGTGCGTAGGGTTACCCGGTGGTTGAGCATc > 2:9141/1‑149 (MQ=255) aaCATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACCCCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCGgccgcc > 2:164797/1‑149 (MQ=255) cATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCaa < 2:460570/149‑1 (MQ=255) catcaAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAAtgggg > 1:319736/1‑147 (MQ=255) atcaAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGCATGGTTACACGGTGGTTGATCAGCGCCTGCTTCCCCCCCCCGCCCAttgtag > 2:127572/1‑147 (MQ=255) aaTGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGGGGTaaa > 1:13467/1‑149 (MQ=255) cAGCGGTTGTTGCTTTTGCTTGTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCa < 2:518252/149‑1 (MQ=255) tgcttttgctttTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGa < 1:409643/97‑1 (MQ=255) tgcttttgctttTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGa > 2:409643/1‑97 (MQ=255) cttttgtttttCCGTTAACGCATGAGGCGCGGCGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGctct < 2:335980/149‑1 (MQ=255) cttttGCGTTAACGCATTGGGCGCGACGGAACCAATCACACCAGGGATTTTCTCTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGa < 2:174484/149‑1 (MQ=255) ccGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTgg < 1:80555/149‑1 (MQ=255) ccGGTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTgg < 1:485875/149‑1 (MQ=255) ggCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGGGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGcc > 1:88311/1‑149 (MQ=255) gcgcGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCCTCGACTGATTCCACCAGCCGCCGATGGTGGTAAAACGCAGAAAACCGCTCACGTTGATGTGGGTGACCATAACGCCg > 2:172328/1‑149 (MQ=255) aTCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATg > 1:471007/1‑149 (MQ=255) tCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGt > 1:355966/1‑149 (MQ=255) | ACCAATTTCCACGCCGCGCTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGT > NC_000913_3_vch_tpiA/4090470‑4090746 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |