New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 2549563	NA (NA)	5 (0.160)	5/270	3.6	18.5%	noncoding (98/98 nt)	RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_vch_tpiA	= 4235454	22 (0.710)					noncoding (4/77 nt)	REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTGGTG  >  NC_000913_3_vch_tpiA/2549416‑2549709                                                                                                                                                    |                                                                                                                                                   cagtcagtGAGGTTACTGACGGGTCTAAGAGTGCTGACAACCGCAAAACTGCCTGATGCGCTGCGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                                                                   <  1:455505/149‑2 (MQ=18)           tGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAAGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAAcgc                                                                                                                                         >  1:334695/1‑149 (MQ=255)                   gctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATACGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGCTAAGGCGTTCACGCCGCCTCCGGCGGCTACAACGCGAACTTgg                                                                                                                                 >  1:371915/1‑149 (MQ=21)                          tGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTcaacaa                                                                                                                          >  1:212743/1‑149 (MQ=255)                               gTGCGGACAAACGAAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATAGATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCGGa                                                                                                                     <  2:457018/149‑1 (MQ=255)                                 gCTGAGAAACGAAAAACTGCCTGATGCTCTACGCTTATCAGGCCTACGTGGAGCCCACTCTCAATTTAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAgg                                                                                                                   <  1:557397/149‑1 (MQ=21)                                   tGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAAAGCGCACTTGGTCAACAATCTGAGGcc                                                                                                                 >  2:416015/1‑149 (MQ=255)                                            taattcTGCTTGTTGTGCAACGCTTATCAGACCTACGTGGAGCCCACAATATATTGAATCAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTaa                                                                                                        <  1:85190/144‑1 (MQ=25)                                                     cTGATGCGCGACGCTTATCAGGCCCACGTCGAGCCCACAATATCTTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGc                                                                                               <  2:500894/149‑1 (MQ=255)                                                        aTGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTg                                                                                            <  2:186141/149‑1 (MQ=255)                                                                cGCTTAACAACCCAACCTGGAGCGCACAATAAATGGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTaa                                                                                    <  1:652/149‑1 (MQ=37)                                                                   ttATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa                                                                                 <  2:208238/149‑1 (MQ=255)                                                                    gaTCAGGCCTACGTGGAGCCCACAATATCTTGAATTAGCACGATTTCGTAGGCCGTATAAGGCGTTCCCGCCGCATCCGGCGTGTACAATGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCaa                                                                                <  2:310992/148‑1 (MQ=255)                                                                        aGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTATTCAATgga                                                                            >  2:240399/1‑147 (MQ=255)                                                                           ccTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTaa                                                                                                        <  1:120012/118‑1 (MQ=255)                                                                           ccTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTaa                                                                                                        >  2:120012/1‑118 (MQ=255)                                                                               cgggaggCCAACAATATATTGAATTAGCACGATTTCGTAGGCGGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGATGCCAGTCAGTAATGTTACTGCCTGGGCTTTAATCAATGAATCAGaaa                                                                     <  2:275787/143‑1 (MQ=37)                                                                               ccgtgagaCCGCAATATATTTAATTAGCTCGATTTCGTAGTCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaaa                                                                     <  2:172423/145‑1 (MQ=37)                                                                                        cacaATATATTGAATTAGCACGATTTCGTAGGCCGGATAGGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAg                                                            >  1:406992/1‑149 (MQ=255)                                                                                         acaATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACACTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc                                                           <  1:498751/149‑1 (MQ=255)                                                                                         acaATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAga                                                           >  1:180465/1‑148 (MQ=255)                                                                                            atatatTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGcc                                                        <  1:236232/149‑1 (MQ=255)                                                                                                 ttGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCaa                                                   <  1:456034/149‑1 (MQ=255)                                                                                                  tGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGGACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAAc                                                  <  2:148078/149‑1 (MQ=255)                                                                                                   gAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACt                                                 >  2:303250/1‑149 (MQ=255)                                                                                                         gCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCa                                           <  2:114156/149‑1 (MQ=255)                                                                                                            cGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACACCGCCAACAACTTGTCCAGCg                                        >  2:503201/1‑149 (MQ=255)                                                                                                              agtttgTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGCCCTTTAAGCAATGAATCATAAACGCTTACAGCGCCATCAACTTGTCCAGCGAc                                      <  2:289529/144‑1 (MQ=37)                                                                                                                ttCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACgg                                    >  1:94764/1‑149 (MQ=255)                                                                                                                ttCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGACAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGCCgg                                    >  1:11821/1‑149 (MQ=255)                                                                                                                tgcGTGGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACgg                                    <  2:227429/147‑1 (MQ=255)                                                                                                                 tCGTAGGCCGGATAAGGCGTTCACGCCGCACCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt                                   <  1:177272/149‑1 (MQ=255)                                                                                                                       gCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaaa                             <  2:212743/149‑1 (MQ=255)                                                                                                                            aTAAGGCGTTCACGCCGCATCCGGTGTTTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAataata                        <  1:232557/149‑1 (MQ=255)                                                                                                                            aTAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAataata                        <  1:354139/149‑1 (MQ=255)                                                                                                                                       aCGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCGAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGACATAATATCCGCCGGTTa             >  2:10453/1‑149 (MQ=255)                                                                                                                                           cgcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCgg         <  1:438669/149‑1 (MQ=255)                                                                                                                                               tCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTg     <  1:303250/149‑1 (MQ=255)                                                                                                                                                  ggCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTGGTg  >  1:237046/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTGGTG  >  NC_000913_3_vch_tpiA/2549416‑2549709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.