| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4497952 | 128 (1.270) | 9 (0.100) | 8/276 | 9.5 | 7.0% | intergenic (+12/‑320) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| ? | NC_000913 | = 4497954 | 118 (1.250) | intergenic (+14/‑318) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGGCCGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4497797‑4497952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccgggcaTTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTATGGAT < NC_000913/4497954‑4497809 AGGGCCGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATC < 2:802380/149‑1 GGCCGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTTGGCCGCTTTTCGGGATGTAAACAGATAAAGGTTTAACAGTCCATTTGAATATGCAAAAATTAATAATCCATTAAAACAGTAATAATCac > 2:1608266/1‑147 GGCCGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCC < 2:1118245/149‑1 CCGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGG > 2:195691/1‑149 CGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGG > 1:1382597/1‑149 CGTATATCCATAAAGCAGAGCATCTGGAAGTACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCA > 1:695869/1‑149 ATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCATTTGC > 1:922145/1‑149 TAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCACGGGCATTGGCCCGGG > 1:883170/1‑149 AAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCATTTGCCCGGGA < 2:606912/149‑1 AGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCATTTGCCCGGGATGATTACTGTTTTAATG < 2:922145/149‑1 TGCTACAGGGTTGGGCCGATTTTAGGGATGTAAACAGAGAAAGGTTTATCAGTACATTTGAAAATGCAAAGAATAATAATCCATAAAAACAGTAATCATCCCGGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTT < 2:188480/149‑1 gTACAGTGTTGGGGCGATTTTATGGATGTAAACAGAGAAAGGTTTATAAGTCCATTTGATTATGCAAAGATTAATATTCCATTAAATCAGTAATCATCCCGGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGC < 2:1442354/148‑1 CTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGC < 2:1296043/149‑1 TGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCATTTGCCCGGGATGATTACTGTTTTAATTGATTATTAATATTTGCATATTa > 1:1069120/1‑148 AGAGAAACGTTTATCATTCCATTTTAATATGCAAAGAATAATAATCCATTAAAAAAGTAATCATCCCGGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTT < 2:1069120/149‑1 CCCGGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTA < 1:152261/149‑1 CCGGGCATTTTCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTAT < 1:1197737/149‑1 CCGGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTAT < 2:1062519/149‑1 CCGGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTAT < 2:7436/149‑1 ctggaATTTGCCAGGGATGATTACTGTTTTAATGGATTATAAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTATG < 1:1081364/144‑1 CGGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTATG > 1:141813/1‑149 GGGCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTATGG < 2:454444/149‑1 GCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGCTAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTATGGAT < 2:957996/149‑1 GCATTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTATGGAT < 2:770515/149‑1 AGGGCCGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4497797‑4497952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccgggcaTTTGCCCGGGATGATTACTGTTTTAATGGATTATTAATCTTTGCATATTCAAATGGACTGATAAACCTTTCTCTGTTTACATCCAGAAAATCGGCCCACCACTGTAGCATCAATCGCCGTTCTTCCAGATGCTCTGCTTTATGGAT < NC_000913/4497954‑4497809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |