Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,397,381 Δ13,756 bp [ynaJ][ttcA] 15 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1397381 1411136 13756 80 [0] [0] 78 [ynaJ]–[ttcA] [ynaJ],uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,ydaM,ydaN,fnrS,dbpA,[ttcA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13973800 (0.000)77 (1.060) 60/292 0.2 100% coding (16/258 nt) ynaJ DUF2534 family putative inner membrane protein
?NC_000913 1411137 = 0 (0.000)coding (812/936 nt) ttcA tRNA s(2)C32 thioltransferase, iron sulfur cluster protein

ACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGAGTGGACGACATCAATG  >  NC_000913/1397232‑1397520
                                                                                                                                                    |                                                                                                                                            
aCCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGTTGAAATGTCATGTTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTAAAAAATGATTATGGAGAAAC                                                                                                                                              >  1:247072‑M1/1‑149 (MQ=255)
aCCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAAC                                                                                                                                              >  1:856311‑M1/1‑149 (MQ=255)
   ttCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACact                                                                                                                                           >  1:676382‑M1/1‑146 (MQ=255)
    tCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACactt                                                                                                                                          <  2:186055‑M1/149‑5 (MQ=255)
     cccTAACAAATCAATGAGTTTATTGTAAATCCAGCTAAGAGGGGAGGTTTTCAGAGGAGACAACGGTTAAATGTCATGGTATTGTTAAGTTTAGTTAACAAGAAATTTGTCTGCACAATTATTACATCATGATTATGGCGAAAcacttc                                                                                                                                         <  1:86879/149‑6 (MQ=255)
       ctaactaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcag                                                                                                                                       >  2:1026972‑M1/1‑142 (MQ=255)
       ctaactaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcag                                                                                                                                       >  1:880880‑M1/1‑142 (MQ=255)
       ctaactaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcag                                                                                                                                       >  2:715631‑M1/1‑142 (MQ=255)
       ctaactaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGATAGGATATCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGCAATGTGTCTGCACAAGGCTTACATCATGATTATGGCGAAACacttcag                                                                                                                                       >  1:602779‑M1/1‑142 (MQ=255)
          actaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaac                                                                                                                                    >  2:705243‑M1/1‑139 (MQ=255)
           ctaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaacc                                                                                                                                   >  1:174881‑M1/1‑138 (MQ=255)
            taaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccg                                                                                                                                  <  2:676382‑M1/149‑13 (MQ=255)
             aaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                                                                 <  2:173058‑M1/149‑14 (MQ=255)
              aTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtg                                                                                                                                <  2:691371‑M1/149‑15 (MQ=255)
               tCAATGCGTTGATTGAAAATGCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgg                                                                                                                               <  2:428706‑M1/149‑16 (MQ=255)
                  aTGCCTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGATCAGACAACGGTGAAATGTCATTGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtg                                                                                                                            <  2:667640‑M1/149‑19 (MQ=255)
                      gTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgc                                                                                                                        >  2:257823‑M1/1‑127 (MQ=255)
                         gATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctt                                                                                                                     <  2:1027994‑M1/149‑26 (MQ=255)
                          aTTGTAAATCCAGCTATGATGTGAGGTTTTCAGAGCAGACAACTGTGAAATGTCATGGTATTGTTACGTTTAGGTTACAAGAAATTTGTCTGCACTAGGATTACTTCATGATTATGGCGAAACacttcagaaccgtgggtgatgccttt                                                                                                                    <  1:537575‑M1/149‑27 (MQ=255)
                          aTTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgccttt                                                                                                                    <  2:1020536‑M1/149‑27 (MQ=255)
                           ttGTAAATCCAGCTTAGAGGGGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTTTTGATACGTTTAGGTAACAAGAAATTTGGCTGCACAAGGATTACCTCATGATTATGGCGAAACacatcagaaccgtgggtgttgcctttg                                                                                                                   <  1:949079‑M1/149‑28 (MQ=255)
                             gTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGCAACacttcagaaccgtgggtgatgcctttgaa                                                                                                                 >  2:1168583‑M1/1‑120 (MQ=255)
                                aaTCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatc                                                                                                              >  2:82504‑M1/1‑117 (MQ=255)
                                   ccAGCTACGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaa                                                                                                           <  1:876634‑M1/149‑36 (MQ=255)
                                       cTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacagg                                                                                                       <  2:376145‑M1/149‑40 (MQ=255)
                                         aaGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggtt                                                                                                     >  1:59629‑M1/1‑108 (MQ=255)
                                         aaGAGGTGAGGATTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggtt                                                                                                     <  1:682848‑M1/149‑42 (MQ=255)
                                          agagGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttg                                                                                                    <  2:138428‑M1/149‑43 (MQ=255)
                                          agagGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttg                                                                                                    <  2:1164046‑M1/149‑43 (MQ=255)
                                            aggtgaggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggt                                                                                                  >  2:1050191‑M1/1‑105 (MQ=255)
                                             ggtgaggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggta                                                                                                 <  1:552909‑M1/149‑46 (MQ=255)
                                              gtgaggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtat                                                                                                >  1:157534‑M1/1‑103 (MQ=255)
                                               tgaggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatc                                                                                               >  2:786937‑M1/1‑102 (MQ=255)
                                               tgaggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatc                                                                                               <  2:880880‑M1/149‑48 (MQ=255)
                                               ggaggttTTCAGATCAGACAACGGTGAAATGTCATGGTATTGTTACTTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatc                                                                                               <  2:254425‑M1/148‑48 (MQ=255)
                                                gaggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcg                                                                                              >  2:1015175‑M1/1‑101 (MQ=255)
                                                   gtTTTCAGAGCAGACAACGGTGCAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagcaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcac                                                                                           >  1:433137‑M1/1‑98 (MQ=255)
                                                          gagCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcg                                                                                    >  1:119245‑M1/1‑91 (MQ=255)
                                                           agCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccttgggtgatgcctttgaaatcgaacaggttggtatctcacagatgcgc                                                                                   >  2:890850‑M1/1‑90 (MQ=255)
                                                           agCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcga                                                                                   <  2:174881‑M1/149‑60 (MQ=255)
                                                               tacAACGGTGAAATTTAATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCAAAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgtctttgaaatcgaacaggttggtatcgcacagatgcgacggc                                                                               <  2:247072‑M1/148‑64 (MQ=255)
                                                                 cAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcac                                                                             <  2:119245‑M1/149‑66 (MQ=255)
                                                                  aaCGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAACCacttcagaaccgtgggtgcggcctttgaaatcgacccggttggtatcgcccagctgcgccggcccc                                                                            >  2:778520‑M1/1‑83 (MQ=255)
                                                                     ggTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacat                                                                         >  2:307865‑M1/1‑80 (MQ=255)
                                                                        gAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAAGacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggacccacattc                                                                      >  2:1129241‑M1/1‑77 (MQ=255)
                                                                        gAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattc                                                                      <  2:353004‑M1/149‑73 (MQ=255)
                                                                           aagtcATTGAATTGTAACGTTTAGGTAACAAGAATTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcgtctgaaatctaacaggttggtatcgcacagatgcgacggcaccacattgtgc                                                                   <  2:1064584‑M1/147‑76 (MQ=255)
                                                                             gTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggc                                                                               <  2:333134‑M1/135‑64 (MQ=255)
                                                                             gTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggc                                                                               >  1:333134‑M1/1‑72 (MQ=255)
                                                                                 tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggaatcgcacagatgcgacggcaccacattctgcatcgcg                                                             <  2:66629‑M1/149‑82 (MQ=255)
                                                                                  ggTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgc                                                            <  1:471665‑M1/149‑83 (MQ=255)
                                                                                   gTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgct                                                           >  1:73329‑M1/1‑66 (MQ=255)
                                                                                        gTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaaca                                                      >  1:434087‑M1/1‑61 (MQ=255)
                                                                                         ttACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgatcaggttggtatcgcacagatgcgacggaacaacattctgcatcgcgcagaacag                                                     >  2:125586‑M1/1‑60 (MQ=255)
                                                                                             gTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtc                                                 >  2:524240‑M1/1‑56 (MQ=255)
                                                                                               ttAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctc                                               <  1:524240‑M1/149‑96 (MQ=255)
                                                                                                   gTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgata                                           >  1:821406‑M1/1‑50 (MQ=255)
                                                                                                   gTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATAATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacgtcaccacattctgcatcgcgctgaacatcgtctcgata                                           >  2:991935‑M1/1‑50 (MQ=255)
                                                                                                        aaGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcggttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccc                                      >  2:631152‑M1/1‑45 (MQ=255)
                                                                                                        aaGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccc                                      >  1:528277‑M1/1‑45 (MQ=255)
                                                                                                         aGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccct                                     >  1:1013316‑M1/1‑44 (MQ=255)
                                                                                                           aaaTTTGTCTGCACAAGGATTACATCATGATTATGGCGATACacttcagaaccgtgggtgatgcctttgaaatcgaacagtttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgctacgccctgg                                   >  1:879951‑M1/1‑42 (MQ=255)
                                                                                                           aaaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagatccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctgg                                   >  2:1167292‑M1/1‑42 (MQ=255)
                                                                                                           aaaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctgg                                   >  1:1081769‑M1/1‑42 (MQ=255)
                                                                                                           aaaTTTGTCTGCACAAGGATTACATCAAGATTATGGCTAAACacttcagaaccgtggttgatgaatttgaaatcgaacaggttggtatcgcacagatgcgactgcaccacatactccatcgccctgaacatcttatcgatacgccatgg                                   >  1:923782‑M1/1‑42 (MQ=255)
                                                                                                               ttGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataa                               <  1:786937‑M1/149‑112 (MQ=255)
                                                                                                               ttGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataa                               <  1:1732‑M1/149‑112 (MQ=255)
                                                                                                               ttGTCTGCACAAGGATTACATCAGGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataa                               <  1:231684‑M1/149‑112 (MQ=255)
                                                                                                                  tCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgt                            <  1:1026972‑M1/149‑115 (MQ=255)
                                                                                                                  gctGCACAAGGATTACATCAAGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgt                            <  2:1152568‑M1/148‑115 (MQ=255)
                                                                                                                      cacaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttat                        <  1:1015175‑M1/149‑119 (MQ=255)
                                                                                                                      cacaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttat                        >  2:650429‑M1/1‑31 (MQ=255)
                                                                                                                      cacaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttat                        <  1:566402‑M1/149‑119 (MQ=255)
                                                                                                                        caAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcc                      >  2:309724‑M1/1‑29 (MQ=255)
                                                                                                                         aaGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgctgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatccc                     >  2:637336‑M1/1‑28 (MQ=255)
                                                                                                                                   tcatGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaa           <  1:1050191‑M1/149‑132 (MQ=255)
                                                                                                                                        aTTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaacatgt      <  1:591840‑M1/149‑137 (MQ=255)
                                                                                                                                        aTTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaacatgt      <  2:821406‑M1/149‑137 (MQ=255)
                                                                                                                                          tATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaacatgtca    <  1:890850‑M1/149‑139 (MQ=255)
                                                                                                                                            tGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacttttatcccagtcactcaacatgtcaga  >  2:260937‑M1/1‑9 (MQ=255)
                                                                                                                                                    |                                                                                                                                            
ACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGAGTGGACGACATCAATG  >  NC_000913/1397232‑1397520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: