| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 696399 = | 18 (0.810) | 4 (0.200) | 4/262 | 2.4 | 19.2% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | NC_000913_3_vch_pgi | 696425 = | 17 (0.830) | intergenic (+149/+5) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGG > NC_000913_3_vch_pgi/696279‑696549 | ttACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGCCATTGAATGAACGCAGAAAAGCACAAAGCTCGCCGAAGCGCTCTTTTTTaa > 2:90049/1‑149 (MQ=255) ccGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCGGAAAAGCAAAAAGCTGGCCGAAGCGAGCTTTTTTAATGTGGGTGGGGTACGCGGATTCGAAc > 1:104954/1‑149 (MQ=255) gTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCGCGGa > 1:337709/1‑149 (MQ=255) cccagttggggtatcgccaagcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTaa > 2:391786‑M1/87‑115 (MQ=255) cccagttggggtatcgccaagcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTaa < 1:391786‑M1/29‑1 (MQ=255) aCGCGGCAGATTCGCATCCGACATTGAAGGATAAGAAGTATCAACATCGCGTTCGACATTGAATGAAAGCAGCAAAGCAAAAAGCTCTCCAGAGCGAGCTTTTTTATTCTTGCTTGAGTAAGATTATTCGAATCTCCGCATGCAGGaga > 2:47208/1‑147 (MQ=255) tCGCATCCGATATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGt > 1:136416/1‑149 (MQ=255) gCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAAGGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAACCGCAAGCCGGTGc > 1:313444/1‑149 (MQ=39) cATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATATGGCTGGGGTACGACGATTCGAAACTCGGAATGCCGGAATCAGTATACGGTGcc > 2:152869/1‑149 (MQ=255) tCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAAGAGCCCAAGGTACGAGGATTCGAAACCCGAAATTCCCGAATCAGAATCCGGTGCCtt > 2:259684/1‑149 (MQ=255) cGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTc < 1:22608/111‑1 (MQ=255) cGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTc > 2:22608/1‑111 (MQ=255) gACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTAcc > 1:135799/1‑149 (MQ=255) aaGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGc < 2:304261/149‑1 (MQ=255) aaGGATAAGACGGGTCAACATCGCATTCGACATGGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGc < 1:288953/149‑1 (MQ=255) aTAAGACGTGGCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATa < 1:49069/149‑1 (MQ=255) ttccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:365536‑M1/33‑1 (MQ=255) ttccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 2:365536‑M1/45‑77 (MQ=255) tCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTgg > 1:186061/1‑149 (MQ=255) aTTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCGTCTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTaa < 2:313826/149‑1 (MQ=255) cacattaaaaaagctcgcttcggcgagctttttTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGaa < 1:365536‑M2/44‑1 (MQ=255) cacattaaaaaagctcgcttcggcgagctttttTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGaa > 2:365536‑M2/34‑77 (MQ=255) aaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTg > 2:345493/1‑149 (MQ=255) ttaaaaaagctcgcttcggcgagctttttTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTggg < 1:391786‑M2/86‑1 (MQ=255) ttaaaaaagctcgcttcggcgagctttttTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTggg > 2:391786‑M2/30‑115 (MQ=255) AAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGc < 1:60565‑M1/92‑1 (MQ=255) AAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGc > 2:60565‑M1/1‑92 (MQ=255) AAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTggg > 1:345493‑M1/1‑149 (MQ=255) | TTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGG > NC_000913_3_vch_pgi/696279‑696549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |