| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 111593 = | 21 (0.950) | 4 (0.190) | 4/270 | 2.5 | 15.4% | noncoding (164/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_pgi | 111626 = | 24 (1.140) | noncoding (197/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAATG > NC_000913_3_vch_pgi/111485‑111770 | cGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGc < 2:33619/149‑1 (MQ=255) gACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCg > 1:234299/1‑149 (MQ=255) aGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCCTCCGACATTTGCACAATATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACt > 1:348273/1‑149 (MQ=255) ggCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTg > 2:166089/1‑149 (MQ=255) gggATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGtt > 2:80900/1‑149 (MQ=255) ttCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCTGCATCCGACATTTGCCCAATATGACTGATTCGTCGCTGTCCGCGTCTTATCGGGCCTACGTGCGGCATCAGCCAAATGTCGCTCCTTTGGTTCTTCg > 1:184003/1‑149 (MQ=38) aCTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCa < 1:69296/149‑1 (MQ=255) aTTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGCTGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCa > 2:383892/1‑149 (MQ=255) aaaTTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACACGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCtt < 1:142865/149‑1 (MQ=255) tttGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATACGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCAAGTCATCGCTTTCg > 1:5843/1‑149 (MQ=255) gTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGaa > 1:61912/1‑149 (MQ=255) gTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCg > 1:226987/1‑149 (MQ=255) caaagcagtgacatttgtctgatgccgcacgtagGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGa > 1:133822‑M1/35‑84 (MQ=255) caaagcagtgacatttgtctgatgccgcacgtagGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGa < 2:133822‑M1/50‑1 (MQ=255) gCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGAt < 2:226987/149‑1 (MQ=255) ttCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAAGCCTACGGGCGACATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCg > 1:54529/1‑149 (MQ=255) aCGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCATCTGCTGGGGATTCGgtt > 1:267660/1‑149 (MQ=255) cgccgcATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGtttt > 1:160732/1‑149 (MQ=255) cgcATCCGACATTTGCACAACATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCCGGGGATTCGTTTttct > 2:14747/1‑149 (MQ=255) tctgatgccgcacgtaggcctgataagacgcggacagcgtcgcatcaggcCTACGTGCGGCATCAGACAAATGTCACTGCTTTg > 1:133822‑M2/51‑84 (MQ=255) tctgatgccgcacgtaggcctgataagacgcggacagcgtcgcatcaggcCTACGTGCGGCATCAGACAAATGTCACTGCTTTg < 2:133822‑M2/34‑1 (MQ=255) tGCACAAGATCGCTGATGCGACGCTGGCCGCGTTTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCAtt < 2:54529/149‑1 (MQ=255) ctgataagacgcggacagcgtcgcatcaggcCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGa > 2:60105‑M2/32‑149 (MQ=255) CTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGa < 2:209843‑M1/149‑1 (MQ=255) gggtggcaCGCGGTCCGCGGCCTAACAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCTCTCCATTTATCGCTTTCGGAAAGATCGCCACTGCTGGGGACTCGTTTTTCTGTAGCAGCCCATTCTCCGAGGTCGAt < 2:123719/142‑1 (MQ=255) gcggcgCTGTCCGCGTGTTATCAGGCACACGTGCGGCATCAGCCAGATGTCACTGCTTGGGTTCTTCGCTCCAGCCGTCGCTTTCGGAAAGATCGCCCCTGCTGGGGATTCGTTTTTCTTCGGCAGCCCGTTCTCCGAGGTCGAtgcgc < 2:38239/149‑5 (MQ=255) cGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCt < 1:166089/149‑1 (MQ=255) aCGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGa < 2:234299/149‑1 (MQ=255) cGCTGTCAGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCTACTGCGGGGGCTTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGGCGATCAGCTGAc > 1:140698/1‑149 (MQ=255) gggTCGGCGGCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCATTGGTTTGGTTCTGCGCTCCAGTCATCGTTTTCGGAAAGATCGGCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACaa < 2:316312/147‑1 (MQ=255) gtcgcatcaggcCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGa < 1:60105‑M2/137‑1 (MQ=255) caggcCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAAt < 1:80900‑M2/144‑1 (MQ=255) aggcCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAATg < 1:14747‑M2/145‑1 (MQ=255) | CGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAATG > NC_000913_3_vch_pgi/111485‑111770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |