New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	1097434 =	NA (NA)	3 (0.170)	3/282	2.4	25.4%	intergenic (+605/+131)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_vch_pgi	1097447 =	9 (0.490)					intergenic (+618/+118)	ycdU/serX	putative inner membrane protein/tRNA‑Ser

CCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCC  >  NC_000913_3_vch_pgi/1097300‑1097591                                                                                                                                                    |                                                                                                                                                 ccccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg                                                                                                                                                 <  1:24730/149‑1 (MQ=32)  cccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagCgg                                                                                                                                                <  2:301786‑M2/3‑1 (MQ=255)  cccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCATTATACGAAAACAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGGGGGTGGGATTGACTCGCTTCGCTCGCCCTGCGGGGAGCCCGCTCACTGCGTTCCCgg                                                                                                                                                >  1:164246/1‑149 (MQ=11)                      cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGc                                                                                                                            >  1:300186/1‑149 (MQ=31)                       ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCCCTGCGTTCACGGTCTGTCCAACGGGCTGTcccc                                                                                                                           >  1:298777/1‑149 (MQ=2)                       ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc                                                                                                                                      >  1:86463/1‑138 (MQ=11)                       ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc                                                                                                                                      <  2:86463/138‑1 (MQ=11)                                 tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCCCTCACTGCGTTCACGGTCTGTCCAACTGGCCGTCGCCAGTTGTccac                                                                                                                 >  2:115488/1‑146 (MQ=0)                                      tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCg                                                                                                            <  2:257856/149‑1 (MQ=32)                                                                                                                                 agaccgtgaacgcagtgagCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCtt                                                                                                  <  1:42323‑M2/49‑1 (MQ=255)                                                                                                                                 agaccgtgaacgcagtgagCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCtt                                                                                                  >  2:42323‑M2/20‑68 (MQ=255)                                                                                                                                            tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCgct      >  2:175367/1‑147 (MQ=14)                                                                                                                                                ttagCGGTCTGTCCACCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCACCCCCCTGGTGTGTGGAATTTTGGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGTGGGGATTCGAAcccc  <  2:266024‑M2/145‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCC  >  NC_000913_3_vch_pgi/1097300‑1097591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.