New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	1027524 =	29 (0.920)	4 (0.130)	4/278	4.1	12.5%	coding (250/663 nt)	yccT	UPF0319 family protein
	?	NC_000913_3_vch_pgi	1027537 =	28 (0.920)					coding (237/663 nt)	yccT	UPF0319 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCGGAATCGGCGTCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTCGAGTACCAGAAGA  >  NC_000913_3_vch_pgi/1027391‑1027684                                                                                                                                                   |                                                                                                                                                    aCCGGAATCGTCGGCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGga                                                                                                                                                   <  2:392686/149‑1 (MQ=255)    ggAATCGGCGTCGCATCGTCATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCCCCAGCGGTGGGGAGat                                                                                                                                                >  1:139665/1‑149 (MQ=255)         ctgCGTCGCATCGCCATCCAACAATTCTATGAGCGGCGCGGTATCAAAATGGTTAGCTTCGCGCTCATTCTCCAGGCGAGCCAGGCGAAACTTGACCTTGTTGATGAGCAGGGTATTAAAACCGACTACCAGCTGCGGGGAGATATACa                                                                                                                                           <  1:455507/147‑1 (MQ=255)                    cgtcATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCa                                                                                                                                <  2:139665/146‑1 (MQ=255)                        aTCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTAt                                                                                                                            >  1:530636/1‑149 (MQ=255)                            aacaaTTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGa                                                                                                                        >  1:144743/1‑149 (MQ=255)                                      gggccggcgcggcATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGAGGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATc                                                                                                              <  2:84107/145‑1 (MQ=255)                                      ggcgcggcgcGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATc                                                                                                              <  1:184612/149‑1 (MQ=255)                                                ggcATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCaa                                                                                                    <  1:116474/149‑1 (MQ=255)                                                  cATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAAcg                                                                                                  >  1:24409/1‑149 (MQ=255)                                                      aaaaTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATGCAGCCGTTCTTCACTCTTGGAAAGATGAATCGTCTTCTCAACGCGaa                                                                                              >  2:376851/1‑149 (MQ=255)                                                       aaaTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGaaa                                                                                             >  2:204569/1‑149 (MQ=255)                                                         aTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAaca                                                                                           <  1:383961/149‑1 (MQ=255)                                                             ttAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTaa                                                                                       <  1:179633/149‑1 (MQ=255)                                                                     ccGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCg                                                                               <  1:105110/149‑1 (MQ=255)                                                                             tcttCAGGCGAGCCAGGCGAAAGTTGTCCTGGATGTGGAGCTGGGTATTAAAACGGACCACCAGCGGTGCGGAGATATACCGCCCTTCTTCCCTTCTCGGAAGATGAATCTTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTa                                                                       <  2:507559/149‑1 (MQ=255)                                                                             tctcCAGGGGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGTGTATTAAAACTGACCACCAGCGGTGGGGAGATATACCGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCACCGCGACACCCTAACCGATGCGGTCCAttc                                                                       <  2:490459/149‑2 (MQ=255)                                                                             tctcCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTa                                                                       <  2:451215/149‑1 (MQ=255)                                                                                ccAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATcc                                                                    <  2:335153/149‑1 (MQ=255)                                                                                    gCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGtt                                                                >  1:506651/1‑149 (MQ=255)                                                                                    gCGAGGCAGGCGAAAATTGACCTAGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGtt                                                                <  1:51444/149‑1 (MQ=255)                                                                                         gcaggcGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATg                                                           <  1:202240/149‑1 (MQ=255)                                                                                                   aTTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCAc                                                 <  1:204569/149‑1 (MQ=255)                                                                                                       aCCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGCTATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTAATGCGGCCCATTATCAAGTTCAATGCTGTCCGCACcgcg                                             >  2:163636/1‑149 (MQ=255)                                                                                                         cTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCCCACCGCgca                                           >  2:494402/1‑149 (MQ=255)                                                                                                                             tAAAACCGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACcttc                       <  1:190354/149‑1 (MQ=255)                                                                                                                               aaatgtcccaccaGCGGTGTGGAGATATCTAGCCGTTCTTCACTATTGTAAAGATGATTCGTCTCCTCAACGCGAAACACTAACGGTTGCGGTCCATTAGCCAGTTCAATGCTGTCCTCACCGCGCAGCAGAGAGCTGGAAACcttctt                     <  1:33786/142‑1 (MQ=255)                                                                                                                                     accaccAGCGGAGGGTAGATTAACAGCCGTACTTCACTATTAGAAAGATGAAACATCTTCTCAACGCGAAACTCTAACTGATCCGGTCCATTACCCAGTTCACCGCTTTCCGCACCGCTTAGCAGAGAGCTGGAAACCTTCTTGCCGTc               <  2:14059/149‑1 (MQ=255)                                                                                                                                       caccaGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTCGa             >  1:131905/1‑149 (MQ=255)                                                                                                                                                  gggAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTCGAGTACCagaaga  >  2:306193/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACCGGAATCGGCGTCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTCGAGTACCAGAAGA  >  NC_000913_3_vch_pgi/1027391‑1027684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.