| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 4094596 = | 48 (1.520) | 4 (0.130) | 4/274 | 4.1 | 8.7% | noncoding (281/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_vch_pgi | 4094626 = | 38 (1.260) | noncoding (311/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCA > NC_000913_3_vch_pgi/4094450‑4094739 | cttGATGCGACGTTGTCGCGTCTTATCAGGCCTACAACTGTGGCCGACCTGTAGGCCGGATAAGGCACTTGGGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGcc < 1:392902/147‑1 (MQ=255) gATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGGAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGa < 1:328056/149‑1 (MQ=255) aCGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGc < 1:80876/149‑1 (MQ=39) aCGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGACCCTAGTGCCGCATCCGGCAATCAATCCCTGATGCGACGCTCTCGCGTCTTATCATGCCTACCACTATTCCCGACCTGTAGGCGGGCTTAGGc > 1:110967/1‑149 (MQ=11) tCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAgg > 2:211550/1‑142 (MQ=38) tCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAgg < 1:211550/142‑1 (MQ=38) cggcTTATCATGCCTACAACTGTTGCCGAGCTGTGGGCCGGAAAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGcc < 1:258165/146‑1 (MQ=11) ttATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCAt > 2:471305/1‑149 (MQ=39) aGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGc > 1:512543/1‑149 (MQ=255) cTACAACTGTTGCCGACCTGTAGGCCGCATAAGACACTTGTGCCGCATCCGGCAATCAATGCCTGCTGCGACGCTGTCGCGTATTATCAGGCCCACAACTATTACCGACCCTTCGGCCGGATAAGGCACTTGCGCCGCACCCCGcaatc > 2:248393/1‑149 (MQ=11) agcatggCCGACCTGGAGGCCGGATAAGGCGCTCGGGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTAGCAGGCCTACAACTCTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGc < 2:384627/143‑1 (MQ=11) aCTGTTGCCGACCTGGAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTCCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGc < 1:428844/149‑1 (MQ=255) aCTGTCGCCGACCTGTAGGCCGGAGAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGc < 1:110881/149‑1 (MQ=255) aGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTc < 1:20105/149‑1 (MQ=34) gCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCgg < 2:158251/97‑1 (MQ=38) ggCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCa > 1:251586/1‑149 (MQ=32) gCACTTGTTCCGCACCCGGCAATCAAGGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATGGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg < 1:104695/149‑1 (MQ=255) gCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCgg > 2:196566/1‑111 (MQ=32) gCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCgg < 1:196566/111‑1 (MQ=32) gCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCCATGCCTGATGCGACGCTGTCGCGTCTTATCAg > 1:85167/1‑149 (MQ=17) cACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGAGGGGGTAGGTACTTGTGCCGCATCCGGCAATCAATTCCTGATGCGACGCTGTCGGGGTTTTTCAgg > 1:268443/1‑149 (MQ=11) ccGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCCCCTCTTATCAGGCCTACCAc > 2:98886/1‑149 (MQ=12) gCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGACTACAACTATTGCGTGCCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGGGTCTTATCAGGCCTACAACTg > 2:280500/1‑149 (MQ=11) ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGa < 2:163625/108‑1 (MQ=33) ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGa > 1:163625/1‑108 (MQ=33) ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCg > 1:6028/1‑149 (MQ=32) gCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTCCAACTGTTGCCGa > 1:110156/1‑149 (MQ=17) gCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGa > 1:111727/1‑149 (MQ=32) aatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACGACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGcc > 1:485525/1‑79 (MQ=255) aatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTa > 2:407262/1‑149 (MQ=35) gCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc < 1:224549/112‑1 (MQ=32) gCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc > 2:224549/1‑112 (MQ=33) ccTGATGCGTCGCTGTCGCGTCTTATAAGGCTTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAAAGCCTGATGAGACGCTGTCGCAACTTAAAAGGCCTACAACTGTCGCCGACCCGTAGGcc < 2:548955/149‑1 (MQ=11) cTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc < 1:406223/110‑1 (MQ=32) cGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAg < 1:410985/149‑1 (MQ=35) gACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg < 2:385092/113‑1 (MQ=32) gCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATCAGgcgc > 2:549769/1‑149 (MQ=25) gcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCgcgc < 2:251586/149‑1 (MQ=255) aTCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACtt > 2:219282/1‑46 (MQ=38) aTCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACtt < 1:219282/46‑1 (MQ=38) aGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGt < 2:9870/81‑1 (MQ=33) aGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCGAGCGCCTTATCCGGc < 1:471305/149‑1 (MQ=11) aaCTCTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGGGACGCTGTCGCGGCTGAGCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTa < 2:477436/149‑1 (MQ=17) aaCTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTCTCAGGCCTACAACTGTTACCGACCCGTAGGCCCGCTAACGCGCTAGCGCCGCATCCGCCAGTGgttc > 2:478662/1‑148 (MQ=14) tATTGCCGACCTGTAGACCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTGGCCGACCCGTAGGCCGGCTAAGGCGCNTGCNCCGCATCCGGCAGGGTTTAccc > 1:500456/1‑149 (MQ=14) ggccTGTAGGCCGGATCAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGa < 1:284447/147‑1 (MQ=255) cTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGAAGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGCCTc > 2:552540/1‑149 (MQ=255) tGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCCACTCa > 1:114048/1‑149 (MQ=255) | CCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCA > NC_000913_3_vch_pgi/4094450‑4094739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |