| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_pgi | 2,393,422 | Δ13 bp | coding (1613‑1625/1842 nt) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_pgi | 2393422 | 2393434 | 13 | 26 [0] | [0] 26 | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2393421 | 0 (0.000) | 26 (0.830) | 24/286 | 0.4 | 100% | coding (1626/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913_3_vch_pgi | 2393435 = | 0 (0.000) | coding (1612/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L | |||||
CAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATT > NC_000913_3_vch_pgi/2393274‑2393565 | cAGATAGCCGTTCTCACTTAACAGCATACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGc < 2:300878‑M1/149‑2 (MQ=255) cccttAATAGCAGACCTTTTCCTGCAAAGCGGGAAAGGACAGCCGGGATGTTAATCGGCAAGCCCGGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccagg < 1:128509‑M1/147‑16 (MQ=255) aaCAGCAGCCCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgccc < 1:361464‑M1/149‑21 (MQ=255) cTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCACTACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtacccccacgtgcccagcagacggc > 1:130368‑M1/1‑119 (MQ=255) gggAAAAGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttgg < 2:537052‑M1/149‑46 (MQ=255) aGGACAGTCGGGGGGTGCATCATTGAGTTCAGCGGATCGCGTTTCACCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatg < 2:161932‑M1/149‑51 (MQ=255) ggACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatgg < 2:426215‑M1/149‑52 (MQ=255) aaagcCGGGATGGTCATCATTGAGTTCAGCGGATCGGGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggag < 2:407188‑M1/147‑54 (MQ=255) aCAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgtccagcagacggcccggcgcactgttggcgatggag < 1:273361‑M1/149‑54 (MQ=255) aCAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggag < 1:83474‑M1/149‑54 (MQ=255) aggttCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccaga < 1:185891‑M1/147‑63 (MQ=255) atcatTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgt < 1:499588‑M1/149‑69 (MQ=255) aGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggccaggcgcactgttggcgctgggggtcaccagagtacgtttacccaggcac > 2:385685‑M1/1‑69 (MQ=255) tCGCGTTTCACCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccag < 1:385685‑M1/149‑87 (MQ=255) cAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccag > 1:308209‑M1/1‑55 (MQ=255) gCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccg < 1:325238‑M1/149‑105 (MQ=255) cAATACCCTGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgtactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccga < 2:405473‑M1/149‑106 (MQ=255) tACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggacaccagcagactgcccggcacactgtttgcgatggagggcaccagagtacgtttacccagccacagccgggctgccagcataatgacgacca > 1:47914‑M1/1‑41 (MQ=255) cAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtac > 1:61232‑M1/1‑37 (MQ=255) cAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtac < 2:61232‑M1/45‑9 (MQ=255) ggAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcga < 1:12860‑M1/149‑115 (MQ=255) gACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccaga > 1:317039‑M1/1‑25 (MQ=255) acacTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccagccggacagcagaatgccgaccaccgcgaccacgcccgagctaa > 2:301982‑M1/1‑20 (MQ=255) tttGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctcccagcagaatgccgaccaccgcgaccacgcaagagcgaatttc > 2:337007‑M1/1‑16 (MQ=255) gTCATACAGCCAGcgttgtacgaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttccag < 2:130368‑M1/149‑137 (MQ=255) gccagcgttgtacccccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttccagggtcaaca < 1:72244‑M1/149‑145 (MQ=255) | CAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATT > NC_000913_3_vch_pgi/2393274‑2393565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |