New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 2074690	41 (1.300)	5 (0.170)	4/264	3.9	11.8%	intergenic (+32/‑89)	flu/yeeR	CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein
	?	NC_000913_3_vch_pgi	= 2074691	37 (1.280)					intergenic (+33/‑88)	flu/yeeR	CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCATTCTTCGCC  >  NC_000913_3_vch_pgi/2074542‑2074836                                                                                                                                                     |                                                                                                                                                   gAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGtcat                                                                                                                                                    >  2:529997/1‑149 (MQ=255)  ccgCCCGTGTCCGGGAAAATACCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGtcatc                                                                                                                                                   <  1:99864/147‑1 (MQ=255)   aGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGtcatca                                                                                                                                                  <  1:158896/149‑1 (MQ=255)    gCCCGTTTCCGGGAAAATATCACCCTGGGCGTTGAGGCCGGTCATGCCCCCAGCGTCAGCGGCAGCAGCGCGGAACGGTATAACGGTCAGGCCACACTCAATGTGACCTTCTGACAGAACCATCGCCTCCCTGTGGTCCCGGtcatcct                                                                                                                                                 >  2:96275/1‑147 (MQ=255)              gggAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGATCCATCGCCTTTCTGTGGTCTCGGTCATCTTGACCGGGatc                                                                                                                                       >  1:169346/1‑147 (MQ=255)                       tctctcTGGGCGTGCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCCGACAGAACCATCGTCTCTCTGTGTTCCCGGTCATCATGACCGGGACCCGGACCGgc                                                                                                                              <  1:257245/144‑1 (MQ=255)                       tCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATAAACGAGACCCGGAACggg                                                                                                                              >  2:463740/1‑148 (MQ=255)                           ccTGGGCGTTCAGGCCGGATATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTTAAGCGACACTGAATGTGACCTTCTGACAGAACAATCGCCTCTCTGTGGTGCCGGTCATCATGAGCGGGACACGGACCGCCGCaa                                                                                                                          >  2:548051/1‑149 (MQ=255)                            cTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAAc                                                                                                                         >  1:210965/1‑149 (MQ=255)                                  gTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCt                                                                                                                   >  2:472185/1‑149 (MQ=255)                                            gTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCACCGGGTCTTCAAAGcccc                                                                                                         >  2:134353/1‑147 (MQ=255)                                                   ccACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCt                                                                                                  >  1:485287/1‑149 (MQ=255)                                                           tCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATGATGACCGGGAc                                                                                                                                        >  2:531331/1‑103 (MQ=255)                                                           tCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATGATGACCGGGAc                                                                                                                                        <  1:531331/103‑1 (MQ=255)                                                            cAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAAc                                                                                         <  1:494855/149‑1 (MQ=255)                                                                ggCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATa                                                                                     >  2:148635/1‑149 (MQ=255)                                                                        cgcTGAAGGGTATAACGGTCAGGCCACCCTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGata                                                                             <  1:83244/149‑1 (MQ=255)                                                                             aaGCGTATACCGGTCAGGCCACACGGAATGCGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATtcat                                                                        <  2:103101/149‑1 (MQ=255)                                                                                ggTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCGTCGCCTCTCTGTGATTCCCGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATCTTCATCAc                                                                     >  1:383908/1‑149 (MQ=255)                                                                                 gTATAACGGTCAGGCCACTCTGACTGTGACCTTCTGACAGAACCATCGCCTCTCTCTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACTGATCTTCAACGCCACATTCGCTGGCATGAACAATGACATGATATTCATCACg                                                                    >  1:511587/1‑149 (MQ=255)                                                                                     aaCGGTCAGGCCACACTCAAGTTCACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGt                                                                <  1:150356/149‑1 (MQ=255)                                                                                       cGGTCATGCCACACTGAATGTGCCCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGa                                                              <  1:208715/149‑1 (MQ=255)                                                                                           cAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTAt                                                          <  1:148635/149‑1 (MQ=255)                                                                                             gggcacaCTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGt                                                        <  2:33116/146‑1 (MQ=255)                                                                                             ggCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTGACAATAACATGATATTCATCACGGAGTGACTATGt                                                        <  1:363269/149‑1 (MQ=255)                                                                                               ccACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTa                                                      >  2:82993/1‑149 (MQ=255)                                                                                                cacaCTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGCTATTGATCAGGGAGGGACTATTTTAc                                                     >  1:10743/1‑149 (MQ=255)                                                                                                      gAATGTGACCTGCTGAGAGAACCATCGCCTCTCTGTGGTCTCGGTCATCATGACCGGGACCCGGATCGGCGCAACGGATTTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAg                                               <  1:453847/149‑1 (MQ=255)                                                                                                         tgggACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCg                                            <  1:417058/146‑1 (MQ=255)                                                                                                           tgACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATCGTCGgc                                          >  1:178235/1‑149 (MQ=255)                                                                                                               cTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCTGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGgcgagc                                      >  1:414617/1‑149 (MQ=255)                                                                                                                        gAACCACCGCCTCTCTGGGGTCCTGGTCAGCCTGACCGGGACCCGGACCGGTGCAACGGATCTTCAACGCCACACTCGCTTGCATTAACAATAACATGATATTCATCACGGAGTGACTCTGTTACAGATAGTCGGCGCGCTGATCctgc                             <  2:213958/149‑1 (MQ=255)                                                                                                                            cATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACCATGTTACAGATAGTCGGCGCGCTGATCCTGCTGAt                         <  2:485287/149‑1 (MQ=255)                                                                                                                            cATCGCCTCACTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATACTGCTGag                         >  2:185677/1‑148 (MQ=255)                                                                                                                                gCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCa                     >  2:258641/1‑149 (MQ=255)                                                                                                                                        gtgGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATCTTCATCACGAAGTGACTATGTTACAGATAGTCGGCCCCCTGATTCTGCTGATCGCAGGAtttcc             >  2:292530/1‑147 (MQ=255)                                                                                                                                            tCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCctg                              >  2:35135/1‑128 (MQ=255)                                                                                                                                            tCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCctg                              <  1:35135/128‑1 (MQ=255)                                                                                                                                              ccGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCAttct       >  1:284300/1‑149 (MQ=255)                                                                                                                                                 gTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCATTCTTCg    >  2:176456/1‑149 (MQ=255)                                                                                                                                                  tcatcaTGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTAGCATTAACAATAACATGAAATTCATCACGGCGGGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTAGCCATCCGTCGc   >  2:303715/1‑149 (MQ=255)                                                                                                                                                   catcatGACCGGGGGCCGGACCGGCCCAACTGATCTTCAACGCTACATTCGCTGGCATGAACAATAACATAATATTCACCACGGAGTGACTATGTTACAGATAGTCGGCGCGCGGATCCTGCTGATCGCAGGATTTGCCATTCTTCGcc  <  1:161477/149‑1 (MQ=255)                                                                                                                                                   catcatGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCATTCTTCGcc  >  2:35835/1‑149 (MQ=255)                                                                                                                                                   catcatGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCATTCTTCGcc  <  1:161907/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCAGCGCTGAAGGGTATAACGGTCAGGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATCCTGCTGATCGCAGGATTTGCCATTCTTCGCC  >  NC_000913_3_vch_pgi/2074542‑2074836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.