| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_pgi | 1,398,976 | C→A | R184L (CGC→CTC) | fnr ← | oxygen‑sensing anaerobic growth regulon transcriptional regulator FNR; autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 1,398,976 | 0 | C | A | 95.6% | 386.1 / 7.1 | 114 | R184L (CGC→CTC) | fnr | oxygen‑sensing anaerobic growth regulon transcriptional regulator FNR; autorepressor |
| Reads supporting (aligned to +/- strand): ref base C (2/3); new base A (61/48); total (63/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
TGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCAT > NC_000913_3_pae_pgi/1398830‑1399121 | gTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTgg < 2:667709/150‑1 (MQ=255) gATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGc > 2:8649/1‑150 (MQ=255) tttACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAacg > 1:1146621/1‑150 (MQ=255) tACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAacgac < 1:8649/150‑1 (MQ=255) tGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGtt > 2:1072751/1‑150 (MQ=255) cAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTa > 1:525443/1‑150 (MQ=255) cAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTa > 1:350830/1‑150 (MQ=255) cATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGAt < 1:1072751/150‑1 (MQ=255) cATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGAt < 1:627473/150‑1 (MQ=255) cATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGAt > 1:944168/1‑150 (MQ=255) cATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGAt < 2:682806/150‑1 (MQ=255) cATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGAt > 1:1075409/1‑150 (MQ=255) gCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCGCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGaa < 2:676289/150‑1 (MQ=255) gCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGaa < 4:589778/150‑1 (MQ=255) ccGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCTTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAAt < 1:15427/150‑1 (MQ=255) ccGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAAt > 1:404190/1‑150 (MQ=255) cTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCa < 3:949391/150‑1 (MQ=255) ttCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGcc < 2:525443/150‑1 (MQ=255) tGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGa > 3:16601/1‑150 (MQ=255) tGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGa > 3:927282/1‑150 (MQ=255) gAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACgg < 1:499493/121‑1 (MQ=255) gAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACg > 4:797104/1‑150 (MQ=255) aGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGtt > 3:962917/1‑150 (MQ=255) gCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTc > 3:1018495/1‑150 (MQ=255) gACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCt > 2:23187/1‑150 (MQ=255) aCCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTc < 3:710313/150‑1 (MQ=255) cccAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCg < 3:357844/150‑1 (MQ=255) ccAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGa < 2:850964/126‑1 (MQ=255) ccAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGa > 1:850964/1‑126 (MQ=255) cagcagACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGc < 1:1331490/150‑1 (MQ=255) agcagACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAacga > 4:420116/1‑108 (MQ=255) cagACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCAtt > 1:1061120/1‑150 (MQ=255) ggCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGGTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTttct > 2:1339572/1‑150 (MQ=255) gCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGa < 2:783381/119‑1 (MQ=255) gCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGa > 1:783381/1‑119 (MQ=255) cTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTttcttc < 1:23187/150‑1 (MQ=255) cTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTttctt < 3:15404/149‑1 (MQ=255) cTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTttctt > 4:15404/1‑149 (MQ=255) tGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCg < 2:944168/150‑1 (MQ=255) tGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCg > 4:621048/1‑150 (MQ=255) gATGGTTTCTACCGTCAGGCCCATATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGa < 3:797104/150‑1 (MQ=255) aTGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGac > 3:253884/1‑150 (MQ=255) tGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGaca > 3:1036062/1‑150 (MQ=255) gcttCTACCGTCAGGCCCAGATAGTTCCCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGACGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGactac < 4:328027/148‑1 (MQ=255) gTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGc < 3:374079/86‑1 (MQ=255) gTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGc > 4:374079/1‑86 (MQ=255) gTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGAGAGAAGCCGAGTTTGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGacaac > 4:423461/1‑150 (MQ=255) aCCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAgg > 3:602135/1‑150 (MQ=255) cGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGAt > 4:837833/1‑150 (MQ=255) gTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATc < 2:842551/150‑1 (MQ=255) gCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATc > 2:652595/1‑145 (MQ=255) gCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTc > 1:550992/1‑150 (MQ=255) gCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTc > 2:1070256/1‑150 (MQ=255) gCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTc > 3:590872/1‑150 (MQ=255) ccAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTg > 4:709400/1‑67 (MQ=255) ccAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTg < 3:709400/67‑1 (MQ=255) cAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTg > 1:427617/1‑150 (MQ=255) aTAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATc < 3:595496/150‑1 (MQ=255) ttACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAGTGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCt > 2:26414/1‑150 (MQ=255) cGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGa > 1:1150702/1‑150 (MQ=255) atatCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGAtt < 1:1627415/150‑1 (MQ=255) atatCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAACAGGATCATGTCCTGATCGCCTTTGAtt > 3:926024/1‑150 (MQ=255) tatCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAacgacg > 2:502160/1‑64 (MQ=255) tatCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAacgacg < 1:502160/64‑1 (MQ=255) cGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCAc < 2:1497544/150‑1 (MQ=255) ccACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGtt < 4:730322/68‑1 (MQ=255) ccACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGtt > 3:730322/1‑68 (MQ=255) ccACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCg < 2:350830/150‑1 (MQ=255) aCGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCAc < 1:198873/146‑1 (MQ=255) aCGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCAc > 2:198873/1‑146 (MQ=255) aCGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCt < 2:371466/150‑1 (MQ=255) cGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCtc < 3:990474/150‑1 (MQ=255) aTCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATg < 1:1675048/70‑1 (MQ=255) aTCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGa > 1:919042/1‑150 (MQ=255) aTCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGa > 4:349737/1‑150 (MQ=255) tCGTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGAc > 3:390207/1‑150 (MQ=255) gTCAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGc > 4:159704/1‑150 (MQ=255) cAGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAGTGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGcat < 1:26414/150‑1 (MQ=255) aGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGcatc > 2:486084/1‑150 (MQ=255) aGGCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGcatc > 3:433444/1‑150 (MQ=255) aGGCGGAATTCAAGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGACCATGTCCTGACCGCCTTTGATTTCCCCGCTCATCAGACGcatc < 2:1011329/150‑1 (MQ=255) ggCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGcatca > 1:1420230/1‑150 (MQ=255) gCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGcatcat > 2:1501290/1‑150 (MQ=255) gCGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGGTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGcatcat > 4:494229/1‑150 (MQ=255) cGGAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACACatcatc > 3:603152/1‑150 (MQ=255) gAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAAt < 3:533033/58‑1 (MQ=255) gAATTCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATctg < 2:404190/150‑1 (MQ=255) ttCACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATctgctg > 2:1303271/1‑150 (MQ=255) cACGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCCGGCTCATGTCATGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGAc > 3:622802/1‑150 (MQ=255) aCGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTttctt > 4:337689/1‑81 (MQ=255) aCGAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTttctt < 3:337689/81‑1 (MQ=255) gAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAAcagc < 2:899380/89‑1 (MQ=255) gAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAAcagc > 1:899380/1‑89 (MQ=255) gAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGc < 4:867549/123‑1 (MQ=255) gAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGc > 3:867549/1‑123 (MQ=255) gAGGGGAGAAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCa > 1:1325053/1‑150 (MQ=255) gagaAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTc < 3:881342/150‑1 (MQ=255) gagaAGCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTc > 3:764830/1‑150 (MQ=255) aGCCGAGTTGGGCAAAACGACGGGACAGGATGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCa < 2:1061519/150‑1 (MQ=255) gCCGAGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCAt > 3:230449/1‑150 (MQ=255) | TGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCAT > NC_000913_3_pae_pgi/1398830‑1399121 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |