New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	2700550 =	132 (1.000)	23 (0.210)	20/214	9.5	16.6%	noncoding (31/77 nt)	ohsC	sRNA antisense regulator of shoB toxin
	?	NC_000913_3_pae_pgi	2700601 =	119 (1.070)					intergenic (+5/+17)	ohsC/acpS	sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCATTAAAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/2700716‑2700550 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggggttttactttttaaAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAG  >  NC_000913_3_pae_pgi/2700601‑2700749                                                                                                                                                                                                                                                                                                                              GCATTAAAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACG                                                                                                                                                                        <  3:959796/150‑1   ATTAAAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGG                                                                                                                                                                      >  1:1559078/1‑150   ATTAAAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGG                                                                                                                                                                      >  2:1245937/1‑150       AAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTT                                                                                                                                                                  >  2:8490/1‑150          CTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTA                                                                                                                                                               <  3:509295/150‑1             GCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCAACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTT                                                                                                                                                            >  2:357605/1‑150              CGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGG                                                                                                                                                                       <  4:156203/138‑1              CGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGG                                                                                                                                                                       >  3:156203/1‑138               GGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTT                                                                                                                                                          >  3:634325/1‑150               GGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTT                                                                                                                                                          <  3:210825/150‑1                GAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTT                                                                                                                                                         <  2:1424361/150‑1                GAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTT                                                                                                                                                         <  1:589407/150‑1                 AAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGTCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTA                                                                                                                                                        <  2:427187/150‑1                             TTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTT                                                                                                                                                                 <  2:318634/129‑1                             TTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTT                                                                                                                                                                 >  1:318634/1‑129                                    TATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACG                                                                                                                                                                        >  1:741969/1‑115                                    TATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACG                                                                                                                                                                        <  2:741969/115‑1                                                                                           GAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGG                                                                                                                                                                     >  3:44152/1‑63                                                                                           GAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGG                                                                                                                                                                     <  4:44152/63‑1                                                                                                                  TCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGC                                                       >  1:419234/1‑150                                                                                                                      TAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTG                                                                  >  2:917175/1‑135                                                                                                                      TAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTG                                                                  <  1:917175/135‑1                                                                                                                       AAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAG                                                                                                         <  4:432674/95‑1                                                                                                                       AAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAG                                                                                                         >  3:432674/1‑95                                                                                                                        AAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCC                                                 >  3:402681/1‑150                                                                                                                          AAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCT                                                                                        <  2:488603/109‑1                                                                                                                          AAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCT                                                                                        >  1:488603/1‑109                                                                                                                            GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTG                                                                                                                >  4:357534/1‑83                                                                                                                            GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTG                                                                                                                <  3:357534/83‑1                                                                                                                            GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTAACGTGGCAGAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCTGCTTTTGCGCCc                                             >  4:510445/1‑149                                                                                                                            GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATA                                                                                                                         >  1:626109/1‑74                                                                                                                            GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATA                                                                                                                         <  2:626109/74‑1                                                                                                                               AAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGT                                           <  4:274136/149‑1                                                                                                                               AAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGT                                           >  3:274136/1‑149                                                                                                                                  CCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCA                                                                                                                            <  4:517670/65‑1                                                                                                                                  CCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCA                                                                                                                            >  3:517670/1‑65                                                                                                                                    CCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATA                                                                                                     <  1:620658/86‑1                                                                                                                                    CCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATA                                                                                                     >  2:620658/1‑86                                                                                                                                     CCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGC                                                                                              >  4:12834/1‑92                                                                                                                                     CCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGC                                                                                              <  3:12834/92‑1                                                                                                                                     CCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAAAGAACGGCATTATTTTTAACTTTCAATAATCACCGTCACACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTAGAAACGCCCAGCAATACCGCCAGTTTTAAct                                    >  2:1544782/1‑148                                                                                                                                                  GAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAG                       <  4:402681/150‑1                                                                                                                                                       GGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATGATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAAT                                     <  2:637094/131‑1                                                                                                                                                       GGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATGATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAAT                                     >  1:637094/1‑131                                                                                                                                                       GGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCAT                                                                       <  2:443265/97‑1                                                                                                                                                       GGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCAT                                                                       >  1:443265/1‑97                                                                                                                                                           TTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCG              <  2:1178657/150‑1                                                                                                                                                            TTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGT             <  2:956066/150‑1                                                                                                                                                            TTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGT             <  2:955908/150‑1                                                                                                                                                                CTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTT         >  3:713777/1‑150                                                                                                                                                                CTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGC                                                                                                              >  3:758689/1‑49                                                                                                                                                                CTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGC                                                                                                              <  4:758689/49‑1                                                                                                                                                                 TTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTT                                                    <  1:616311/106‑1                                                                                                                                                                 TTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTT                                                    >  2:616311/1‑106                                                                                                                                                                 TTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATA                                                                                                     <  1:953967/57‑1                                                                                                                                                                 TTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATA                                                                                                     >  2:953967/1‑57                                                                                                                                                                  TTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACTCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTG       <  1:1055441/150‑1                                                                                                                                                                   TTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGC      <  3:787677/150‑1                                                                                                                                                                       AAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAG  >  2:977379/1‑150                                                                                                                                                                                                                                                                                                                              GCATTAAAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/2700716‑2700550 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggggttttactttttaaAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAG  >  NC_000913_3_pae_pgi/2700601‑2700749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.