New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 2892692	19 (1.100)	4 (0.240)	4/260	1.8	17.7%	coding (36/1272 nt)	ygcN	putative oxidoreductase
	?	NC_000913_3_pae_pgi	= 2892701	19 (1.150)					coding (45/1272 nt)	ygcN	putative oxidoreductase
Rejected: Frequency below/above cutoff threshold.

ATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGGCGGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTCATCTGA  >  NC_000913_3_pae_pgi/2892566‑2892846                                                                                                                                        |                                                                                                                                                  atcGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTgcgc                                                                                                                                     <  2:63281/150‑1 (MQ=255)             gATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgcgc                                                                                                                         <  4:48553/150‑1 (MQ=255)                     tgtgtCGGTGGTGAATTACGCTTGAGTAACGTTATGTTAGGGTGTTGTGTTATGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGGGCGGGTATTGCAGGCTCCGCTTGCGTGTTACGCTGCGCGCGAGCgg                                                                                                                 <  2:42763/150‑1 (MQ=255)                       tgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGt                                                                                                               >  4:40667/1‑150 (MQ=255)                         tCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGttt                                                                                                             <  1:30788/150‑1 (MQ=255)                            gcggTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATc                                                                                                          <  1:33747/150‑1 (MQ=255)                                tCAATTGCCCTTAATTAACGCTATGTTAGGGTTTTGTGTGCGTGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGtt                                                                                                      <  2:187090/150‑1 (MQ=255)                                    tttCCCTTAAGTAACGCTATGTTGGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGt                                                                                                  >  2:188968/1‑150 (MQ=255)                                                aaCGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGGTTATCCGTTTTGTTACTGTAAcgcg                                                                                      >  4:117289/1‑150 (MQ=255)                                                                      ttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTCCGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCaaaaa                                                                >  3:104811/1‑150 (MQ=255)                                                                          ggATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCtt                                                            >  2:112983/1‑150 (MQ=255)                                                                                 tGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCcggcg                                                     >  4:10287/1‑150 (MQ=255)                                                                                  ggggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGt                                                                                                               <  3:119179/91‑1 (MQ=255)                                                                                  ggggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGt                                                                                                               >  4:119179/1‑91 (MQ=255)                                                                                    ggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTCTTGCAGGCCACGATTGAGCGTTACGATGCGCGCGAGCGGTTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCggcgggc                                                  <  3:117289/150‑1 (MQ=255)                                                                                      cATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGgcgggcgg                                                <  1:61625/150‑1 (MQ=255)                                                                                             tGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAggcaccaataataataatgtcgcagtcgtcttccatgtcatgccccagatatccagaacacaacaccctaacatagcgttacttaagggaa                                                        <  2:27667‑M2/135‑92 (MQ=255)                                                                                             tGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAggcaccaataataataatgtcgcagtcgtcttccatgtcatgccccagatatccagaacacaacaccctaacatagcgttacttaagggaa                                                        >  1:27667‑M2/1‑44 (MQ=255)                                                                                                                           gTGCCGGTATTGCAggcaccaataataataatgtcgcagtcgtcttccatgtc                                                                                                            <  3:116121‑M2/53‑40 (MQ=255)                                                                                                                           gTGCCGGTATTGCAggcaccaataataataatgtcgcagtcgtcttccatgtc                                                                                                            >  4:116121‑M2/1‑14 (MQ=255)                                                                                                                              ccGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGGCGGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTc        <  1:112983/150‑1 (MQ=255)                                                                                                                                 gTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGGCGGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTCATc     <  1:188968/150‑1 (MQ=255)                                                                                                                                    ttGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGGCGGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTCATCTGa  <  3:40667/150‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                  ATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGGCGGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTCATCTGA  >  NC_000913_3_pae_pgi/2892566‑2892846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.