New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 2700861	15 (0.870)	5 (0.310)	4/250	1.8	25.8%	coding (138/381 nt)	acpS	holo‑[acyl‑carrier‑protein] synthase 1
	?	NC_000913_3_pae_pgi	= 2700868	15 (0.940)					coding (131/381 nt)	acpS	holo‑[acyl‑carrier‑protein] synthase 1

CGTAGCCGTGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCACGCGCTTCCA  >  NC_000913_3_pae_pgi/2700730‑2701014                                                                                                                                           |                                                                                                                                                   cgtagccgtGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTggtgcgttttc                                                                                                                                         >  4:16883‑M2/1‑139 (MQ=255)      ccgtGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt                                                                                                                                    <  3:83137/150‑1 (MQ=255)      ccgtGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt                                                                                                                                    <  3:83110/150‑1 (MQ=255)                          catTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTa                                                                                                                <  1:99831/150‑1 (MQ=255)                             tGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATa                                                                                                             >  2:13161/1‑150 (MQ=255)                                             aTTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCg                                                                                             <  2:63704/150‑1 (MQ=255)                                                 aaCGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCa                                                                                         >  3:73046/1‑150 (MQ=255)                                                      cAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGa                                                                                    >  4:51177/1‑150 (MQ=255)                                                           cATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg                                                                               >  1:158293/1‑150 (MQ=255)                                                              tGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGa                                                                            >  3:105419/1‑150 (MQ=255)                                                                aaagatgcGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATc                                                                          >  4:95953/8‑150 (MQ=255)                                                                               aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATgcga                                                           >  3:112125/1‑150 (MQ=255)                                                                                    ttttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtttaatgaatgt                                                      <  1:130199‑M2/150‑95 (MQ=255)                                                                                      ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAtct                                                    <  2:158293/150‑1 (MQ=255)                                                                                          tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtt                                                                >  3:90748‑M2/1‑50 (MQ=255)                                                                                          tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtt                                                                <  4:90748‑M2/134‑85 (MQ=255)                                                                                                        caGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCAGTGCCTa                                  >  3:111486/1‑150 (MQ=255)                                                                                                                        cAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtttaatcaatttgaagtattcaatgatgagctcggcaaaccacggcta                  <  1:3822‑M2/150‑131 (MQ=255)                                                                                                                        cAGAAAACGCACCGGCTGGTggtgcgttttctggcgaagcgttttgctgtgaaagaagccgcagcaaaagcgtttggcaccgggatccgcaatggtctggcgtttaatcaatttgaagtattcaatgatgagctcggcaaaccacggcta                  <  1:3807‑M2/150‑131 (MQ=255)                                                                                                                                gCACCGGCTGGTGGTGCGATTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGTATCGGGCGCTCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTACCATTAGCCAcg          >  2:171015/1‑150 (MQ=255)                                                                                                                                        tggtggTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCTATCACCGCTTCGATGCGAGCGATCTCCACAGTATCCGTGCCTAAACCTAATATTGCCATTAGCCACGCGCTTCCa  <  2:135039/150‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                   CGTAGCCGTGGTTTGCCGAGCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCACGCGCTTCCA  >  NC_000913_3_pae_pgi/2700730‑2701014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.