New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	925564 =	25 (1.440)	4 (0.250)	4/252	1.8	15.6%	intergenic (+24/+320)	clpA/serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
	?	NC_000913_3_pae_pgi	925596 =	20 (1.250)					intergenic (+56/+288)	clpA/serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
Rejected: Frequency below/above cutoff threshold.

TCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGT  >  NC_000913_3_pae_pgi/925455‑925741                                                                                                                                              |                                                                                                                                                  tcaCCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTTGAAAGAGGTTACGGACTTTTTGTTTAt                                                                                                                                           <  1:141809/150‑1 (MQ=255)  caCCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATg                                                                                                                                          >  1:133240/1‑150 (MQ=255)       tCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTg                                                                                                                                     >  4:74467/1‑150 (MQ=255)           gcTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTggagg                                                                                                                                 <  2:64676/150‑1 (MQ=255)              ggATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGaggagg                                                                                                                              <  1:157838/150‑1 (MQ=255)                cttttttatccttaccttcccgcagcactaattatcaacaacttaccatcatcattaaaaaaagggtctgaacctcctccaccccataaacaaaAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTg                                                                                                                                                <  2:35073‑M1/36‑1 (MQ=255)                cttttttatccttaccttcccgcagcactaattatcaacaacttaccatcatcattaaaaaaagggtctgaacctcctccaccccataaacaaaAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTg                                                                                                                                                >  1:35073‑M1/95‑130 (MQ=255)                 tAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTc                                                                                                                           <  2:1785/150‑1 (MQ=255)                    agagAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGa                                                                                                                        >  2:126201/1‑150 (MQ=255)                           ttaccttcccgcagcactaattatcaacaacttaccatcatcattaaaaaaagggtctgaacctcctccaccccataaacaaaAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTgga                                                                                                                                   <  2:12314‑M1/49‑1 (MQ=255)                           ttaccttcccgcagcactaattatcaacaacttaccatcatcattaaaaaaagggtctgaacctcctccaccccataaacaaaAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTgga                                                                                                                                   >  1:12314‑M1/84‑132 (MQ=255)                                         cGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATgg                                                                                                   <  3:74467/150‑1 (MQ=255)                                          ggATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGt                                                                                                  <  2:172968/150‑1 (MQ=255)                                            aTTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTaa                                                                                                >  1:30932/1‑150 (MQ=255)                                              tCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAgt                                                                                              >  1:65324/1‑150 (MQ=255)                                                  gagTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAgttgtt                                                                                          <  1:126201/150‑1 (MQ=255)                                                        acaAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAAt                                                                                    >  4:82529/1‑150 (MQ=255)                                                                  aaGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCg                                                                          >  4:113787/1‑150 (MQ=255)                                                                                  aTTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATaaa                                                          >  1:32319/1‑150 (MQ=255)                                                                                     aaTCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATaaaaaa                                                       <  3:113787/150‑1 (MQ=255)                                                                                             tccaccccataaacaaaaagtccgtaacctctttcgagattacggacttTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTaa                                                                 >  1:12314‑M2/50‑132 (MQ=255)                                                                                             tccaccccataaacaaaaagtccgtaacctctttcgagattacggacttTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTaa                                                                 <  2:12314‑M2/83‑1 (MQ=255)                                                                                               ttAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCa                                             <  2:133240/150‑1 (MQ=255)                                                                                                 aggtaggtTGGTCAAGTCCGTACCCTCAAAAGAGGGTACTGACTTGTGGTTTATTGGGTGGGGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAgg                                           <  1:38477/150‑1 (MQ=255)                                                                                                  ggtaggtTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGga                                          <  3:358/150‑1 (MQ=255)                                                                                                      ggtTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAAt                                      <  2:32319/150‑1 (MQ=255)                                                                                                          caaaaagtccgtaacctctttcgagattacggacttTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAg                                                      <  2:35073‑M2/94‑1 (MQ=255)                                                                                                          caaaaagtccgtaacctctttcgagattacggacttTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAg                                                      >  1:35073‑M2/37‑130 (MQ=255)                                                                                                                  CCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTg                          >  3:82529‑M1/1‑150 (MQ=255)                                                                                                                      AATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAg                                                                     >  2:89029‑M1/1‑103 (MQ=255)                                                                                                                      AATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAg                                                                     <  1:89029‑M1/103‑1 (MQ=255)                                                                                                                                          acttTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACgt  <  2:30932‑M2/146‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                  TCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGT  >  NC_000913_3_pae_pgi/925455‑925741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.