New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4124709	13 (0.750)	4 (0.240)	3/258	2.1	22.7%	coding (2102/2199 nt)	priA	Primosome factor n' (replication factor Y)
	?	NC_000913_3_pae_pgi	= 4124729	15 (0.910)					coding (2082/2199 nt)	priA	Primosome factor n' (replication factor Y)
Rejected: Coverage evenness skew score above cutoff.

ATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTG  >  NC_000913_3_pae_pgi/4124574‑4124851                                                                                                                                        |                                                                                                                                               atatTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGaa                                                                                                                                  <  2:190272/150‑1 (MQ=255)        aTTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGtgct                                                                                                                           <  2:89002/150‑1 (MQ=255)                                   cGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGAc                                                                                                <  4:109235/150‑1 (MQ=255)                                     gTTTAACCCTCTATCGGATCAAGATCCAGCACCCATTGCACCTTACGGGAATCCGGTAGTGTATTGAGGAGCGCAAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCg                                                                                              <  2:162158/150‑1 (MQ=255)                                             cTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGGTGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGttt                                                                                      >  4:67047/1‑150 (MQ=255)                                                          aCATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGcc                                                                         <  4:6477/150‑1 (MQ=255)                                                                           cACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAAc                                                        <  4:39501/150‑1 (MQ=255)                                                                                     gAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGCACCGGACCGAGAAACCACAGTTtc                                              >  4:86787/1‑150 (MQ=255)                                                                                             tattgtattgATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGc                                      <  2:49677/150‑1 (MQ=255)                                                                                                       atgaGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgc                                                                                                             >  3:108875/1‑69 (MQ=255)                                                                                                       atgaGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgc                                                                                                             <  4:108875/69‑1 (MQ=255)                                                                                                            cgcCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGagag                       >  3:64792/1‑150 (MQ=255)                                                                                                                                 gtgtTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGttgttg  <  4:64792/150‑1 (MQ=255)                                                                                                                                        |                                                                                                                                               ATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTG  >  NC_000913_3_pae_pgi/4124574‑4124851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.