| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 3328181 | 19 (1.100) | 4 (0.250) | 4/252 | 1.8 | 17.2% | intergenic (+98/+58) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| ? | NC_000913_3_pae_pgi | = 3328184 | 21 (1.310) | intergenic (+101/+55) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTATCGCCCAACTAAAGAACGTAAAATCTCGCTGCCACGCTAAGATTATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGTAATTCTTACAGGTATTCCACCTTAATTACTTCAAATTCTACTTCGCCGCCCGGCGTTTTGATGACCACAACATCATCTTCTTCTTTGCCGAT > NC_000913_3_pae_pgi/3328041‑3328325 | ttATCGCCCAACTAAAGAACGTAAAATCTCGCTGCCACGCTAAGATTATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAgcggcc < 4:82209‑M2/150‑7 (MQ=255)ttATCGCCCAACTAAAGAACGTAAAATCTCGCTGCCACGCTAAGATTATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAgcggcc < 1:140516‑M2/150‑7 (MQ=255) cAACTAAAGAACGTAAAATCTCGCTGCCACGCTAAGATTATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCct < 2:11284/150‑1 (MQ=255) aCTAAAGAACGTAAAATCTCGCTGCCACGCTAAGATTATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCcttt > 2:173672/1‑150 (MQ=255) cTAAAGAACGTAAAATCTCGCTGCCACGCTAAGATTATCCTAAAGTTACACACATTTGCTGGGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGATCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCctttc < 2:6736/150‑1 (MQ=255) aaCGTAAAATCTCGCTGCCACGCTAAGATTATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACa < 2:26769/150‑1 (MQ=255) ccACGCTAAGATTATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGa < 1:47352/150‑1 (MQ=255) gATTATCCTGAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGt > 3:94788/1‑150 (MQ=255) tATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGTAAt < 3:82209/150‑1 (MQ=255) cTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCGCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTGCTTTACAATACATCAACATCTTTAGTATTGGGTAATTCtt > 1:87020/1‑150 (MQ=255) tAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCctttct < 2:116158/111‑1 (MQ=255) tAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCctttct > 1:116158/1‑111 (MQ=255) aaaGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGTAATTCTTAc > 3:72621/1‑150 (MQ=255) aaGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGTAATTCTTACa < 2:72690/150‑1 (MQ=255) cacaTTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGTAATTCTTACAGGTATTcc < 1:173672/150‑1 (MQ=255) cGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAgcggccttttatcaacgaacagagcgtggcattttg < 1:4531‑M2/101‑37 (MQ=255) cGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAgcggccttttatcaacgaacagagcgtggcattttg > 2:4531‑M2/1‑65 (MQ=255) gAGGGGTTTTCCGCAGGCAGGAAAGCAAAATGCCACGCACTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGTAATTCTTACAGGTATTCCACCTTAATTACTTCAAAtt > 4:23849/1‑150 (MQ=255) ttttCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCtatgcggccttttatcaacgaacagagcgtggcatt < 2:162589‑M1/91‑37 (MQ=255) ttttCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCtatgcggccttttatcaacgaacagagcgtggcatt > 1:162589‑M1/1‑55 (MQ=255) cAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCtatgcggccttttatcaacgaacagagcgtggcattttgctctcctgcctgcggaaaacccctcg < 1:4531‑M1/101‑66 (MQ=255) cAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCtatgcggccttttatcaacgaacagagcgtggcattttgctctcctgcctgcggaaaacccctcg > 2:4531‑M1/1‑36 (MQ=255) cAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAg > 4:122242/1‑80 (MQ=255) cAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAg < 3:122242/80‑1 (MQ=255) aaTGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAgcggccttttatcaacgaacagagcgtggcattttgctctcctgcctgcggaaaa < 2:162589‑M2/91‑56 (MQ=255) aaTGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAgcggccttttatcaacgaacagagcgtggcattttgctctcctgcctgcggaaaa > 1:162589‑M2/1‑36 (MQ=255) cACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACAACTTGAGTATTGGGTAATTCTTACAGTTATTCCACCTTAATTAGTTCAAATACTACTTCGCCGCCCGGCGTTTTGATGAcaacaa > 1:62374/1‑150 (MQ=255) gTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGGGTATTGGGTAATTCTTACAGGTATTCCACCTTAATTACTTCAAATTCTACTTCGCCGCCCGGCGTTTTGATGACCACAACATCAtcttctt > 2:142941/1‑150 (MQ=255) gATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGTAATTCTTACAGGTATTCCACCTTAATTACTTCAAATTCTACTTCGCCGCCCGGCGTTTTGATGACCACAACATCATcttcttctt < 3:23849/150‑1 (MQ=255) ggCCGCtatgcggccttttatcaacgaacagagcgtggcattttgctctcctgcctgcggaaaacccctcgttttacacagcaaatgtgtgtaactttaggataatcttagcgtggcagcgagattttacgttctttagttgggcgataa < 4:82209‑M1/150‑145 (MQ=255) ggCCGCtatgcggccttttatcaacgaacagagcgtggcattttgctctcctgcctgcggaaaacccctcgttttacacagcaaatgtgtgtaactttaggataatcttagcgtggcagcgagattttacgttctttagttgggcgataa < 1:140516‑M1/150‑145 (MQ=255) | TTATCGCCCAACTAAAGAACGTAAAATCTCGCTGCCACGCTAAGATTATCCTAAAGTTACACACATTTGCTGTGTAAAACGAGGGGTTTTCCGCAGGCAGGAGAGCAAAATGCCACGCTCTGTTCGTTGATAAAAGGCCGCATAGCGGCCTTTTTCCTTTCTTTACAATACATCAACATCTTGAGTATTGGGTAATTCTTACAGGTATTCCACCTTAATTACTTCAAATTCTACTTCGCCGCCCGGCGTTTTGATGACCACAACATCATCTTCTTCTTTGCCGAT > NC_000913_3_pae_pgi/3328041‑3328325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |