New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 225281	NA (NA)	24 (0.210)	18/264	10.7	NA	noncoding (1511/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913_3_pae_pgi	= 225293	NA (NA)					noncoding (1523/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
Rejected: Coverage evenness skew score above cutoff.

GTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTG  >  NC_000913_3_pae_pgi/225275‑225424       |                                                                                                                                                gtcaCCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTCAAAGAAGCGCACTTTACAGTTCTCACCAAGACTCTCTTAAGAAAATGAGCAGTATGACATCTACAGGCTTATAGCACAGGAGATCAGAGCGCCGCCCTGATAAGGGTg  >  4:746405/4‑150 (MQ=0)       |                                                                                                                                                GTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTG  >  NC_000913_3_pae_pgi/225275‑225424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.