mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 27.4% | 264.6 / 120.1 | 168 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 25.4% | 309.7 / 121.5 | 170 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 24.9% | 378.6 / 134.1 | 165 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 22.6% | 336.7 / 86.2 | 159 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,208,231 | 0 | T | A | 21.7% | 41.7 / 11.2 | 23 | noncoding (85/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon |
| Marginal new junction evidence (lowest skew 10 of 361 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 1207805 | 103 (0.890) | 23 (0.220) | 23/242 | 7.3 | 19.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_pgi | = 1209602 | 96 (0.940) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_pgi | 1207790 = | 107 (0.920) | 21 (0.210) | 17/242 | 9.4 | 17.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_pgi | 1209619 = | 99 (0.970) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_pgi | = 3944978 | NA (NA) | 35 (0.320) | 19/262 | 9.5 | 49.1% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_pgi | = 4038811 | 38 (0.330) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_pgi | 2727891 = | NA (NA) | 35 (0.320) | 19/262 | 9.5 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 227052 | 67 (0.580) | 35 (0.320) | 19/262 | 9.5 | 35.3% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 225281 | NA (NA) | 21 (0.190) | 17/264 | 10.3 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_pgi | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 715221 | 134 (1.160) | 17 (0.160) | 15/252 | 10.6 | 12.3% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913_3_pae_pgi | = 715231 | 118 (1.110) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913_3_pae_pgi | 1757141 = | 123 (1.060) | 16 (0.150) | 15/258 | 10.9 | 12.2% | intergenic (+31/‑280) | pykF/lpp | pyruvate kinase I/murein lipoprotein |
| ? | NC_000913_3_pae_pgi | 1757161 = | 114 (1.050) | intergenic (+51/‑260) | pykF/lpp | pyruvate kinase I/murein lipoprotein | |||||
| * | ? | NC_000913_3_pae_pgi | 2700066 = | 113 (0.980) | 14 (0.130) | 13/250 | 11.5 | 12.3% | intergenic (+143/+51) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein |
| ? | NC_000913_3_pae_pgi | 2700100 = | 97 (0.920) | intergenic (+177/+17) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein | |||||
| * | ? | NC_000913_3_pae_pgi | = 4040683 | 99 (0.850) | 28 (0.250) | 14/270 | 11.8 | 22.5% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_pgi | = 4213162 | 95 (0.830) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||