| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_pae_pgi | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_pae_pgi | 257908–258676 | 258683 | 8–776 | 44 [0] | [0] 44 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 257907 | 0 (0.000) | 40 (1.050) | 35/264 | 0.2 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913_3_pae_pgi | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
TGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTT > NC_000913_3_pae_pgi/258541‑258831 | gtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcacgtatattcgtgaaggtaAGTGCa > 1:490936‑M2/144‑149 (MQ=255) gttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa < 1:352065‑M2/8‑1 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagagagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:560715‑M2/11‑1 (MQ=255) ccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt < 2:22887‑M2/30‑1 (MQ=255) atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc > 1:258069‑M2/117‑149 (MQ=255) atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc > 1:258692‑M2/117‑149 (MQ=255) atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttacagcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc < 1:605614‑M2/33‑1 (MQ=255) atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgaatggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattggtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc > 2:102677‑M2/117‑149 (MQ=255) gtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattggtcgaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCAATTGTctgggc > 1:351948‑M2/112‑147 (MQ=255) atcacaacaggagatagcaatgacgttaccgaggggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCGAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg > 2:709481‑M2/99‑149 (MQ=255) tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGt < 2:490936‑M2/52‑1 (MQ=255) acaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa > 1:556‑M2/96‑149 (MQ=255) aacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAGGCGTCAACGTTaaa > 1:309077‑M2/94‑149 (MQ=255) ggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCATTAACATGAAACCgg > 1:128611‑M2/90‑149 (MQ=255) gagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt > 1:322246‑M2/89‑130 (MQ=255) gagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt < 2:322246‑M2/42‑1 (MQ=255) agcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCgg > 2:701291‑M2/84‑149 (MQ=255) acgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑Cg > 2:603746‑M2/77‑149 (MQ=255) agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTg < 2:258692‑M2/82‑1 (MQ=255) agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTg < 2:258069‑M2/82‑1 (MQ=255) gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagtgaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAAGCGTCAACGTGAAACCCGCACCGGAATTG‑CTTGAATCctgggtc > 2:30800‑M2/64‑147 (MQ=255) acccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCtgg > 2:545503‑M2/61‑149 (MQ=255) agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCtggt < 1:288313‑M2/90‑1 (MQ=255) agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCtggt > 2:288313‑M2/50‑139 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTgg > 1:213257‑M2/48‑149 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTgg > 2:237003‑M2/48‑149 (MQ=255) ttgatcaaaaaatctaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGa < 1:101777‑M2/103‑1 (MQ=255) tgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGaa < 1:545503‑M2/104‑1 (MQ=255) tcatcaaaaaatttaccgcactaggcccgtacattcttgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACCTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGaa < 1:140146‑M2/104‑1 (MQ=255) tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGCCAGCG‑ATATAAGTCTGGGGCTGGTGGATGGAG‑CTGGAAgcg < 1:534195‑M2/107‑1 (MQ=255) aaaaaattcaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCa < 1:190595‑M2/109‑1 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAg < 1:488470‑M2/110‑1 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTATATGGCAGTATGCGTCAACGTG‑TACATGCTGCGGCAGGGTCGTGAATTCTGGGGCTGGTGGTTGGAG‑CTGGAAGCGCAg > 1:525009‑M2/40‑149 (MQ=255) aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAgg > 2:91101‑M2/39‑149 (MQ=255) ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGt < 2:213257‑M2/119‑1 (MQ=255) cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑AGTGAATTCTGGGGCTGGGGGATTGAGTCTGG‑AGAGCAGGAATAccggt > 1:667855‑M2/30‑147 (MQ=255) gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAC‑GTGGAAGCGACGGAATGCCGTTTTCCCTAc > 2:215399‑M2/22‑149 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGATGTATGCGTCAACGTGAAACCGGCCCCGGAAGTG‑CGTGAATTCTGGGGTTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGTTTTACCTACAGtt > 1:475850‑M2/18‑149 (MQ=255) atattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAc < 1:603746‑M2/134‑1 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGttt > 2:128341‑M2/10‑149 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg < 1:91101‑M2/141‑1 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGGGAAACCGGCACCGGCAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg < 2:556‑M2/141‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGACTGTATGAGTCAACGTGAAACCGGCACCGAAAGTG‑GGTTAATTATGGGGCTGGTGGATGGAG‑CTGGAAGCGAAGGAATCGCGTTTTACCAACAGTTACCCGTTTGGTctt > 2:103711‑M2/4‑148 (MQ=255) aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGtt < 1:701291‑M2/148‑1 (MQ=255) | TGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTG‑CGTGAATTCTGGGGCTGGTGGATGGAG‑CTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTT > NC_000913_3_pae_pgi/258541‑258831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |