New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	3676218 =	70 (1.200)	8 (0.140)	6/266	7.1	10.3%	noncoding (98/161 nt)	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913_3_pae_pgi	4613521 =	NA (NA)					noncoding (5/388 nt)	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCT  >  NC_000913_3_pae_pgi/4613373‑4613669                                                                                                                                                     |                                                                                                                                                     gCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCTGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCTATAGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAgg                                                                                                                                                      <  1:259324/149‑1 (MQ=255)   cGCTCAACGGTTTTCAGGGGCAGCCTATCCGCCCGGAGCAGGCTGCCCGTGGGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGcc                                                                                                                                                    <  1:312371/149‑1 (MQ=255)    gCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCg                                                                                                                                                   >  1:386078/1‑149 (MQ=255)     cTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGGGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCgg                                                                                                                                                  <  1:743662/149‑1 (MQ=255)      ccggcGGGTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGa                                                                                                                                                 <  2:110178/145‑1 (MQ=255)        aaCGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATa                                                                                                                                               >  2:170089/1‑149 (MQ=255)        aaCGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGGTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATa                                                                                                                                               >  1:624992/1‑149 (MQ=255)         aCGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATaa                                                                                                                                              >  2:906472/1‑149 (MQ=255)          ctgTTTTCAGGGTCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAg                                                                                                                                             <  1:235660/147‑1 (MQ=255)             ttttCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCg                                                                                                                                          >  2:688548/1‑149 (MQ=255)             ttttCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTAAACGTGCCGTAGGCCGGATAAGGCg                                                                                                                                          >  1:730135/1‑149 (MQ=255)               ttCAGGGGGCGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGtt                                                                                                                                        <  1:337210/149‑1 (MQ=255)               ttCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACCCGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGtt                                                                                                                                        >  2:312021/1‑149 (MQ=255)               gtCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGGGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATCCGGTTTGGAACTGGCCGTAGGCCGGATAAGGCGtt                                                                                                                                        <  2:235779/148‑1 (MQ=255)                tCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTc                                                                                                                                       >  2:72095/1‑149 (MQ=255)                    gggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTGTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCAcgc                                                                                                                                   <  1:573400/149‑1 (MQ=255)                     ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGTCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                  <  2:622851/149‑1 (MQ=255)                     ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                  <  2:621979/149‑1 (MQ=255)                     ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                  <  2:200955/149‑1 (MQ=255)                       cAGCCTAACCGCCCGGAGCAAGCTGCCCGTGTGTTCGCCGTGTCTTGCGCGTTGAGCCGGGCACCTGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCAcgccgc                                                                                                                                >  2:504356/1‑149 (MQ=255)                        aGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCa                                                                                                                               >  1:235185/1‑149 (MQ=255)                          ccTAACCGCCCGGAGCAGGCTGCCCATGTGTTCGCCGTGCTTTGCGAGGTGCACCGCGAACCGGCAGATGAGATTGCGCAAGCGTTACTTAATAAAACGTATACGTTATTTAACGTGCAGTCAGCAGGACAAGACGTTCTCGCAGCAta                                                                                                                             >  2:299609/1‑148 (MQ=255)                            tAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCCCGCCGCATCCg                                                                                                                           >  1:388190/1‑149 (MQ=255)                            tAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGAAAAGGCGTTCACGCCGCATCCg                                                                                                                           >  2:1070665/1‑149 (MQ=255)                             aaCCGCCCGGAGCAGGCTGTCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCTGGGAATCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                                          <  2:341201/149‑1 (MQ=255)                             aaCCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                                          <  2:793721/149‑1 (MQ=255)                             aaCCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                                          <  2:340752/149‑1 (MQ=255)                               ccGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                        >  2:197450/1‑149 (MQ=255)                               ccGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                        >  1:488737/1‑149 (MQ=255)                                 gCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGACGCATCCGGCAGt                                                                                                                      >  2:714389/1‑149 (MQ=255)                                  cccGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGtt                                                                                                                     >  1:780057/1‑149 (MQ=255)                                       aGCAGGCTGCGCGTGTGTTCGGCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGgcgc                                                                                                                <  2:1012613/149‑1 (MQ=255)                                           ggCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACaa                                                                                                            >  1:167050/1‑149 (MQ=255)                                           ggCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACaa                                                                                                            <  1:355146/149‑1 (MQ=255)                                            gCTGCCCGTGTGTTCGCCGTGCTTTCCGAGTTGCGCCGGGAACTGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCCTAGGCCGCATAAGGCGTTCACGCCGCATGCGGCAGTTGGCGCACAAt                                                                                                           >  1:822123/1‑149 (MQ=255)                                               gCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGcc                                                                                                        <  1:649302/149‑1 (MQ=255)                                               gCCCGTGTGTTCGCCGTGCCTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCTCGCAATTcc                                                                                                        <  2:992399/149‑1 (MQ=255)                                                    tgtgtTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATg                                                                                                   <  1:381403/149‑1 (MQ=255)                                                    tgtgtTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATg                                                                                                   >  2:653023/1‑149 (MQ=255)                                                     gtgtTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGc                                                                                                  >  1:729617/1‑149 (MQ=255)                                                        ttCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTCTACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCATAATGCCTGATGCGAc                                                                                               >  2:120542/1‑149 (MQ=255)                                                            ccGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGCCGCtt                                                                                           >  2:383433/1‑149 (MQ=255)                                                                 cTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCttgtcgc                                                                                      <  1:197450/149‑6 (MQ=255)                                                                   ttGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAGGCTTAACGCGt                                                                                    >  1:255116/1‑149 (MQ=255)                                                                   ttGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGt                                                                                    <  2:388190/149‑1 (MQ=255)                                                                   ttGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGt                                                                                    <  2:597920/149‑1 (MQ=255)                                                                   ttGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGt                                                                                    <  2:199185/149‑1 (MQ=255)                                                                             cgcCGGGAACCGGCGGATGCGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGc                                                                          <  1:281269/149‑1 (MQ=255)                                                                             cgcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                                                                                           <  2:569676/100‑1 (MQ=255)                                                                             cgcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                                                                                           >  1:569676/1‑100 (MQ=255)                                                                             cgcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGc                                                                          <  2:890298/149‑1 (MQ=255)                                                                              gcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATAGGTGGTGGAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTAATCATAcc                                                                         >  1:849097/1‑149 (MQ=25)                                                                              gcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTACCGTGCCGTAGGCCGGATAAGGCGTTCACCCCGCATCCGGCAGGTGGCGCACAATGCCTGTTGCGACGCTTAACGGGGCTTGTCATgtc                                                                         >  1:118396/1‑147 (MQ=25)                                                                              gcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGcc                                                                         >  1:918820/1‑149 (MQ=255)                                                                              gcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGcc                                                                         >  1:74244/1‑149 (MQ=255)                                                                              gcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTAGCGCACAATGCCAGATGCGACGCTTAACCCGCCTTAGCAGGcc                                                                         >  1:767554/1‑149 (MQ=25)                                                                                   gAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAg                                                                    <  2:240196/149‑1 (MQ=255)                                                                                   gAACCGGCGGATGAGATTGCCCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAg                                                                    <  1:915026/149‑1 (MQ=255)                                                                                    aaCCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAgg                                                                   >  1:510317/1‑149 (MQ=255)                                                                                     aCCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGt                                                                  >  1:559567/1‑149 (MQ=255)                                                                                         gcggATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTtgt                                                              <  1:170089/149‑1 (MQ=255)                                                                                          cggATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTtgtg                                                             <  1:542114/149‑1 (MQ=255)                                                                                           ggATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGc                                                            <  2:406656/149‑1 (MQ=255)                                                                                                 gaTTGCGCAAGCGTTGCTTAATAACCCGTTTGCGTTGTTCAACGAGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAAcc                                                      <  1:378604/149‑1 (MQ=18)                                                                                                 gaTTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAAcc                                                      <  2:167050/149‑1 (MQ=255)                                                                                                  aTTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCg                                                     >  2:309153/1‑149 (MQ=255)                                                                                                       gcAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACTCTTAACGCGTCTTATCATGCCTACAGGATTGTGCCGAACCGTAGGc                                                >  1:876261/1‑149 (MQ=255)                                                                                                       gcAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGc                                                >  2:760170/1‑149 (MQ=255)                                                                                                       gcAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGc                                                >  2:680512/1‑149 (MQ=255)                                                                                                       gcAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGc                                                >  1:17427/1‑149 (MQ=255)                                                                                                             gTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTa                                                   >  2:665479/1‑140 (MQ=255)                                                                                                             gTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGCGCCGAACCGTa                                                   <  1:665479/140‑1 (MQ=255)                                                                                                              ttGCTTAATGACACGTATACGCTGTTTAACGGGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGTGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATaa                                         <  1:855143/149‑1 (MQ=255)                                                                                                               tGCTTAATACCACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTTGGCCGGATAAg                                        <  1:666086/149‑1 (MQ=255)                                                                                                               tGCCTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAg                                        <  1:653023/149‑1 (MQ=255)                                                                                                                 cTTAAGAACACGTACACGTTGTTTAACGTTCTGTAGGCCGTATAAGGCGTTCACGGCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGc                                      <  1:227233/149‑1 (MQ=17)                                                                                                                  ttAATAACACGAATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACACTGCCTGATGCGACGCTTCACGCGTCTTATCATGCCTGCAGGTTTGTGCCGAGCCGTGGCCCGGATAAGCCg                                     >  1:663901/1‑149 (MQ=18)                                                                                                                      taaCAGGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGGAGAGCAGTGGGCCGGATAAggtttaca                                 <  2:1044810/149‑7 (MQ=18)                                                                                                                      taaCACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCa                                 >  1:725433/1‑149 (MQ=255)                                                                                                                      taaCACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCa                                 >  2:77207/1‑149 (MQ=255)                                                                                                                        acacGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACAGTAGGCCGGATCACGCGTTctcc                               >  2:293390/1‑146 (MQ=17)                                                                                                                         ctcGTATACGTTGTTTAACGTTCCGTAGGCCGGATAAGGTTTTCACGGCTCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCGTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAATCGTAGGCCGGATAAGGCGTTCAcgc                              <  1:202514/147‑1 (MQ=17)                                                                                                                          acGTATACGTTGTTTAACGTGCCGTAGGCCGGAAAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAcgcc                             <  1:1070665/149‑1 (MQ=255)                                                                                                                               taCGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATc                        >  1:452764/1‑149 (MQ=255)                                                                                                                                  gttgttTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                     <  1:72095/149‑1 (MQ=255)                                                                                                                                     gttTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTCCCGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCCCCTCCGGccg                  >  2:426652/1‑147 (MQ=255)                                                                                                                                     gttTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAg                  >  2:803625/1‑149 (MQ=255)                                                                                                                                          aCGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGgc             <  2:202540/149‑1 (MQ=255)                                                                                                                                          aCGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACACCGCATCCGGCAGTTggg             >  2:261754/1‑148 (MQ=255)                                                                                                                                           cGTGTCGTAGGCCGGATAAGACGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACGGTAGGCTGGATAAGGCGTTCACGCCGCATCCGGCAGTTGgcg            <  1:785455/149‑1 (MQ=255)                                                                                                                                           cGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAGGCCGCATGCGGCAGTTGccg            >  1:564182/1‑149 (MQ=255)                                                                                                                                            gTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGgcgc           <  2:452764/149‑1 (MQ=255)                                                                                                                                                 gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGcc                                               >  2:779219/1‑108 (MQ=255)                                                                                                                                                 gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGcc                                               <  1:779219/108‑1 (MQ=255)                                                                                                                                                 ctAGGCCGGAGAAGGCGTTCACGCCGCATGCGGACGTGGGCGAACAAGGCCTGATGCGACGCGGACCGCGTCTTATCAGGCCTACAGGTTTGTGCCGAGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAAt      <  2:521172/148‑1 (MQ=11)                                                                                                                                                     gCCGGATGCGCCGTGCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCt  <  2:386078/149‑1 (MQ=14)                                                                                                                                                     gCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGCTAAGGCGTTCATGCCGCATCCGGCAGTTGGCGCATCATGCCt  >  2:905837/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCT  >  NC_000913_3_pae_pgi/4613373‑4613669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.