New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 155228380 (1.300)8 (0.140) 6/256 6.9 10.3% noncoding (35/97 nt) RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_pae_pgi 3676223 = 66 (1.170)noncoding (103/161 nt) RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAACGCCGCC  >  NC_000913_3_pae_pgi/3676079‑3676371
                                                                                                                                                |                                                                                                                                                    
atccATGTGACGCGACATTAATCGTTTTATAAAGGTTGAAAAGCCTGATGCGCTACGCTTACCAGGTCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCACCCTGCATGAACAAAg                                                                                                                                                  <  2:254196/147‑1 (MQ=21)
aCCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCGGGGTAAGGGGTTGTCGCCGGGTCGGGCGTGGACaagg                                                                                                                                                  >  1:282209/1‑147 (MQ=37)
  ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                                                                                                                      >  2:578167/1‑143 (MQ=255)
  ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                                                                                                                      <  1:578167/143‑1 (MQ=255)
  ccATCACACGCGAAATCAGCCCTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCCCCAAGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca                                                                                                                                                <  1:212335/149‑1 (MQ=25)
  acATGAGACGCGAAATCAGTCGTTGTAATAAGAGTGAAAATACTGATGGGCTAAGCTTATCAGGCGTGAAATTCGATAAAATATAATGAATTCGCAAAGATTTGTAGGCGGGATAAGGCGTTGAAGCCGCATCCGGCGTGAACAAAgat                                                                                                                                                >  2:56873/2‑147 (MQ=255)
     tGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCacac                                                                                                                                             >  1:548714/1‑149 (MQ=255)
        gaCACGACATCAGTCGTTGTATTAAGAGTGAAAAGCCTGATGCGCGACGCATATCAAGCCTGAATTGCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCATCCGGCCTGCACGAAGCAAACttt                                                                                                                                          >  2:60567/1‑149 (MQ=25)
          cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc                                                                                                                                        >  2:443871/1‑149 (MQ=255)
          cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGAGTTCTCGCCGCATCCGGCATGAACAAAGCACACTTTGc                                                                                                                                        <  1:908389/149‑1 (MQ=255)
           gcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCACGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGcc                                                                                                                                       >  1:694145/1‑149 (MQ=255)
           gcgACATCAGTCGTTGTAATAAGAGCGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGcc                                                                                                                                       >  2:72737/1‑149 (MQ=255)
                aTCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAAAAAGCCCACTTTGCcaacaa                                                                                                                                  >  1:537329/1‑149 (MQ=255)
                     tCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa                                                                                                                             >  2:996602/1‑149 (MQ=255)
                     tCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa                                                                                                                             <  1:342497/149‑1 (MQ=255)
                            aataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGtt                                                                                                                      <  2:39115/149‑1 (MQ=255)
                              taaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa                                                                                                                                     >  1:103142/1‑132 (MQ=255)
                              taaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa                                                                                                                                     <  2:103142/132‑1 (MQ=255)
                                 gagTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAAtc                                                                                                                 >  1:56054/1‑148 (MQ=255)
                                   gTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGc                                                                                                               >  2:1008037/1‑149 (MQ=255)
                                    tGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTACCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGcc                                                                                                              >  2:946342/1‑149 (MQ=255)
                                     gAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                             <  1:101016/149‑1 (MQ=255)
                                           ccTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTc                                                                                                       <  2:2673/149‑1 (MQ=255)
                                            cTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTct                                                                                                      <  1:646707/149‑2 (MQ=255)
                                            cTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa                                                                                                      <  1:983824/149‑1 (MQ=255)
                                             tGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAg                                                                                                     >  2:140211/1‑149 (MQ=255)
                                                tGCGCTACGCTTATCAGGCCTGAATTTCAATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCGGGATGTCAAACa                                                                                                  >  1:217411/1‑149 (MQ=255)
                                                  ctcTACGCTTATCAGGTCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATc                                                                                                <  1:595377/147‑1 (MQ=255)
                                                   tcTACGCTTATCAGGCCTGAATTTCCAAACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATcc                                                                                               <  1:365414/148‑1 (MQ=255)
                                                   gcTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATcc                                                                                               <  1:710404/149‑1 (MQ=255)
                                                         cTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTACATCTGTTTAATTGCCGGATGTCAGACATCCGGCAAt                                                                                         >  2:60845/1‑149 (MQ=255)
                                                          tcaTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAAtt                                                                                        >  2:941882/3‑149 (MQ=255)
                                                            aTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                             >  2:800866/1‑126 (MQ=255)
                                                            aTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                             <  1:800866/126‑1 (MQ=255)
                                                             tCAGGCCTGAATTTCAATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCTGACATCCGGCAATTaaa                                                                                     <  1:795127/149‑3 (MQ=255)
                                                                    tGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt                                                                              >  1:686965/1‑149 (MQ=255)
                                                                      aaTTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct                                                                            >  1:849810/1‑149 (MQ=255)
                                                                              tACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATATGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGc                                                                    >  1:1010416/1‑149 (MQ=255)
                                                                                        tGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg                                                          <  2:686965/149‑1 (MQ=255)
                                                                                         gacttCGAAAGGATTTGTAGGCGGGATAAGGCGTTCACGCCGCATGCGGCATGAACAAAGCACACTTTGCAAAAAATCTAACCCGGTTTAATTGCCGGATGTAAGACAGCCGGCAATTATCATCACTTCTGCATCTGCTACAAAATCGt                                                         <  2:873545/146‑1 (MQ=25)
                                                                                          aaTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                                        <  2:306581/149‑1 (MQ=255)
                                                                                           aTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTcc                                                       <  1:941882/149‑1 (MQ=255)
                                                                                               gCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAAACATCCGGCAATTATCATCACTTCTTCATCTGCGCCAAAACCgccagcca                                                   >  2:882767/1‑142 (MQ=37)
                                                                                                cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                             <  1:867716/90‑1 (MQ=255)
                                                                                                cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                             >  2:867716/1‑90 (MQ=255)
                                                                                                cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGacac                                                  <  1:443871/149‑1 (MQ=255)
                                                                                                 caGGATTTGTAGGCCGTATAAGCCGTTCACGCCTCATCCGGCATGAACAAAGCACACTCTGCCAACAATCTACACCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                                 <  1:86257/148‑1 (MQ=38)
                                                                                                 aaGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                                 >  2:3901/1‑149 (MQ=255)
                                                                                                 aaGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                                 >  1:149304/1‑149 (MQ=255)
                                                                                                  aGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg                                                >  2:675190/1‑149 (MQ=255)
                                                                                                  aGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAAAAGTCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg                                                >  2:675107/1‑149 (MQ=255)
                                                                                                      tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTa                                            <  1:996602/149‑1 (MQ=255)
                                                                                                         gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGATCTTCAACGAGTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGcc                                         >  1:250850/1‑149 (MQ=37)
                                                                                                          tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCACCTGAGACAAAATCGTACGACACTGATAAACCt                                        >  1:574522/1‑149 (MQ=38)
                                                                                                           aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTc                                       <  2:682467/149‑1 (MQ=255)
                                                                                                               cGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACACAATCGTCCGACACTGATTAGCCTCCCCt                                   >  1:319330/1‑149 (MQ=255)
                                                                                                                 gATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTc                                 <  2:149304/149‑1 (MQ=255)
                                                                                                                  aTAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGCCCTCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCg                                <  1:60845/149‑1 (MQ=255)
                                                                                                                      ggCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAg                            >  2:519305/1‑149 (MQ=255)
                                                                                                                      ggCGTCCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAg                            <  2:51915/149‑1 (MQ=255)
                                                                                                                       ggggtCACGCCGCATCCGGCATGAACAAAGCACACCGTGCCAACAATTTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAgg                           <  2:231571/145‑1 (MQ=255)
                                                                                                                        cGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGt                          <  1:72737/149‑1 (MQ=255)
                                                                                                                               gccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCa                   <  1:328366/149‑1 (MQ=255)
                                                                                                                                 cgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGt                 >  2:791662/1‑149 (MQ=255)
                                                                                                                                   cATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGc               <  1:140211/149‑1 (MQ=255)
                                                                                                                                   cATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGc               <  1:519305/149‑1 (MQ=255)
                                                                                                                                       cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                                        >  1:182847/1‑104 (MQ=255)
                                                                                                                                       cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                                        <  2:182847/104‑1 (MQ=255)
                                                                                                                                       cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGt           <  2:548714/149‑1 (MQ=255)
                                                                                                                                          cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAc        <  1:675190/149‑1 (MQ=255)
                                                                                                                                          cATGAACAAAGAACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAAACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAc        <  1:675107/149‑1 (MQ=255)
                                                                                                                                            tGAACAAAGCACACTTTGCCATCAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAcgc      <  1:684933/149‑1 (MQ=255)
                                                                                                                                               aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAcgccgc   >  2:79151/1‑149 (MQ=255)
                                                                                                                                                cAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTAGCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAcgccgcc  >  1:799146/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
ACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAACGCCGCC  >  NC_000913_3_pae_pgi/3676079‑3676371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.