New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	72136 =	NA (NA)	9 (0.140)	9/264	6.9	NA	noncoding (1/85 nt)	REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_pae_pgi	72169 =	NA (NA)					noncoding (34/85 nt)	REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAA  >  NC_000913_3_pae_pgi/71989‑72279                                                                                                                                                    |                                                                                                                                                cgcgggTCGTTTGTCGTGGCGTACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACGCGTTGATGACCGTGTATACTGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGc                                                                                                                                                <  2:508928/145‑1 (MQ=255) ccGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGTCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGc                                                                                                                                                <  1:1059940/149‑1 (MQ=255) ccGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGc                                                                                                                                                <  2:343119/149‑1 (MQ=255) ccGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGc                                                                                                                                                >  2:807296/1‑149 (MQ=255)   gcgGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCt                                                                                                                                              <  1:1126416/149‑1 (MQ=255)   gcgGTCGTTTGTTGTGGCTGACGCCGTTGAGTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCt                                                                                                                                              >  1:1198302/1‑149 (MQ=255)      gTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTTCTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGAt                                                                                                                                           <  1:174921/149‑1 (MQ=255)      gTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGAt                                                                                                                                           <  1:161732/149‑1 (MQ=255)       tCGTTTGTTGTTGCTGACGCCGTTTATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATg                                                                                                                                          <  1:666939/149‑1 (MQ=255)         gTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAATGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCg                                                                                                                                        >  1:624760/1‑149 (MQ=255)          tttGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGa                                                                                                                                       >  1:146138/1‑149 (MQ=255)                  ggCTGACGCCGTTGATTTCTGCCATCGGCGTGGTTGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGACGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGcc                                                                                                                               <  1:356541/149‑1 (MQ=255)                  ggCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGcc                                                                                                                               >  1:696325/1‑149 (MQ=255)                   gCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCcg                                                                                                                              >  1:869796/1‑149 (MQ=255)                         gCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCCCGTCtt                                                                                                                        >  1:806846/1‑149 (MQ=255)                              tGATTTCGGCACTCGGCGGGGTGGCGCTGGTGGTGTTAATTCGTCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                                   <  2:10100/149‑1 (MQ=255)                               gATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                                                                  >  1:626960/1‑149 (MQ=255)                               gATTTCTGCCATCGGCGTGGTGGAGCTGGTGGTGTTAATCCTCAGCGCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAAATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTATTATCAgg                                                                                                                  >  2:11650/1‑149 (MQ=255)                                aTTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATGCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                 <  2:174873/149‑1 (MQ=255)                                 tttCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                                >  2:422675/1‑149 (MQ=255)                                 tttCTGCCATCGGCGTGGTGGCGCAGGTGGAAATCTGACGCCACCCGTTGATGCCGGTGTATATCGATAGTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCACGTCTTATCAGccc                                                                                                                >  2:570551/1‑149 (MQ=255)                                     tGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGACACGCTTGCCGCGTCTTATCAGGCCTACa                                                                                                            >  2:859807/1‑149 (MQ=255)                                        cATCGGCGTGGTGGCGCTGGTGGTGTTAAGTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaaaa                                                                                                         <  1:1040585/149‑1 (MQ=255)                                         aTCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAc                                                                                                        >  1:528676/1‑149 (MQ=255)                                            ggCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCa                                                                                                     <  2:528676/149‑1 (MQ=255)                                             gCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCAc                                                                                                    >  1:428349/1‑149 (MQ=255)                                             gCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCAc                                                                                                    <  1:766719/149‑1 (MQ=255)                                                tggtggCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTAc                                                                                                 <  1:928220/149‑1 (MQ=255)                                                         tggtggTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTc                                                                                        <  1:931265/149‑1 (MQ=255)                                                           gtggtgTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACa                                                                                                            >  2:725203/1‑127 (MQ=255)                                                           gtggtgTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACa                                                                                                            <  1:725203/127‑1 (MQ=255)                                                              gtgtTAATCCGCCACCCGTTGATGCCGGTGTATATCGATATTATGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGGCTACAAAACGCACTCCCCGTAGATAGGATa                                                                                   >  2:387676/1‑149 (MQ=39)                                                                gtTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTATCCGTAGGTCGGATAAg                                                                                 <  2:146138/149‑1 (MQ=255)                                                                gtTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAg                                                                                 <  2:403304/149‑1 (MQ=255)                                                                gtTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAg                                                                                 <  1:421126/149‑1 (MQ=255)                                                                 ttAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAgg                                                                                >  1:913438/1‑149 (MQ=255)                                                                 ttAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAgg                                                                                <  1:311646/149‑1 (MQ=255)                                                                   gattctgcACTCGTTGATGCCTGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCg                                                                              <  2:911813/142‑1 (MQ=255)                                                                   aaTTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTCCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCg                                                                              >  1:1030555/1‑149 (MQ=255)                                                                   aaTTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGATGGGGTATAGGAGATACTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTGCTACGGCCTAAACAAATAACTCCCCGTAGGCCGGCTAAcgcg                                                                              >  2:499703/1‑149 (MQ=255)                                                                      ggggcACCCGTTGGTGCCGGTGTATATCGATAGTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGGTGCCTGATGCGGCGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTc                                                                           <  2:856210/145‑1 (MQ=38)                                                                        gCCAGCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCAc                                                                         <  2:873472/149‑1 (MQ=255)                                                                           aCCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAGGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCAcgac                                                                      >  1:525128/1‑147 (MQ=255)                                                                             ccGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCAcgccgc                                                                    >  2:682863/1‑149 (MQ=255)                                                                                 tGATGCCGGTGTATATCTATAGTTTGCGTAAAGTGGGTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGTCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATcc                                                                <  1:108247/149‑1 (MQ=255)                                                                                     gCCGGTGTATATCGATATTTTGCGTAAATTGGGTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACa                                                            <  2:131813/149‑1 (MQ=255)                                                                                     gCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCCGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACa                                                            <  2:1054521/149‑1 (MQ=255)                                                                                       cGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                                   >  1:21268/1‑92 (MQ=255)                                                                                       cGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                                   <  2:21268/92‑1 (MQ=255)                                                                                        ggTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGta                                                         <  2:930447/149‑2 (MQ=255)                                                                                         gtgtATATCGATATTTTGCGTAAAGGGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTAATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGc                                                        <  1:1076771/149‑1 (MQ=255)                                                                                                 cgttatTTTGCGTAAAGTGGTTGGGGGTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAAc                                                <  2:523210/146‑1 (MQ=255)                                                                                                  gATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAAcc                                               >  1:375464/1‑149 (MQ=255)                                                                                                  gATATTTTGCGTAAAGTGGTTGGGGTATAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCAAGACGCATACGACCGTGCATACTAAcc                                               >  2:801495/1‑149 (MQ=38)                                                                                                   atatTTTGCGTAAAGTGGTTGGGTTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAAccc                                              <  1:422675/149‑1 (MQ=255)                                                                                                   atatTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCCTCGCACAGTGCGTAcaatacc                                              >  1:789257/1‑143 (MQ=37)                                                                                                   atatTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAAccc                                              >  1:603842/1‑149 (MQ=255)                                                                                                    tatTTTGCGTAAAGTGGTTGGGGTTCAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCg                                             <  1:11147/149‑1 (MQ=255)                                                                                                                  tGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGt                               <  1:969481/149‑1 (MQ=255)                                                                                                                        gggTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGaa                         <  2:984941/149‑1 (MQ=255)                                                                                                                           tttAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                                   >  1:309451/1‑56 (MQ=255)                                                                                                                           tttAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                                   <  2:309451/56‑1 (MQ=255)                                                                                                                            ttAGGAGGTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCATAACAAGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCAc                     <  1:646442/149‑1 (MQ=255)                                                                                                                             gaGGAGAGAGTCTGGTGCGGCTTGCCTGATGCGACGCGCGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTATGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACACGAACTCCCCAATAGTCACGAAACACt                    <  2:876223/148‑1 (MQ=25)                                                                                                                              aGGCGATAGTCGTGTGCGGGTCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTc                   <  1:387676/149‑1 (MQ=255)                                                                                                                               ggAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCg                  >  2:623479/1‑149 (MQ=255)                                                                                                                               ggAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTCGCCGCGTCTTATCAGGCCTACCAAACACCCTATCCGTCGGCCGGCCAAGGCGTTCCCCCCGCATCCGACCTTCCTTACTAACCCGTAATCCCCAATAGTGCCGAGGCACACg                  >  2:413049/1‑149 (MQ=255)                                                                                                                                gagaTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGc                 >  1:160411/1‑149 (MQ=255)                                                                                                                                   aTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCg                                                                              >  1:606725/1‑85 (MQ=255)                                                                                                                                   aTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCg                                                                              <  2:606725/85‑1 (MQ=255)                                                                                                                                    taggtttGTGCGGGTGGCCTGATGCGACGCTTTTCGCGTCTGATCGGGCCTACACAACGCACTACCCGTAGGTCGGACAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGGGCCGAAGCACTCGCCTTa             <  2:1022306/144‑1 (MQ=38)                                                                                                                                       tCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTa                                                                                            >  1:578533/1‑67 (MQ=255)                                                                                                                                       tCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTa                                                                                            <  2:578533/67‑1 (MQ=255)                                                                                                                                       tCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCg          <  2:626960/149‑1 (MQ=255)                                                                                                                                       tCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTCCCGAAGCACTCGCCTTACCg          >  2:30887/1‑149 (MQ=255)                                                                                                                                         ttGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCt        >  1:351947/1‑149 (MQ=255)                                                                                                                                               gtgTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAACCACTCGCGTTCCCGCTcaccac  >  2:213013/3‑148 (MQ=37)                                                                                                                                                    |                                                                                                                                                CCGCGGTCGTTTGTTGTGGCTGACGCCGTTGATTTCTGCCATCGGCGTGGTGGCGCTGGTGGTGTTAATTCGCCACCCGTTGATGCCGGTGTATATCGATATTTTGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAA  >  NC_000913_3_pae_pgi/71989‑72279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.