New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 2877646	24 (1.020)	3 (0.130)	3/272	3.1	10.8%	intergenic (+28/+923)	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease
	?	NC_000913_3_pae_pgi	= 2877662	27 (1.210)					intergenic (+44/+907)	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAGGCTCTTCCTGGAAGAATAGAACGTCGCTGCCGTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTG  >  NC_000913_3_pae_pgi/2877527‑2877805                                                                                                                                        |                                                                                                                                                aTAAGGCTCTTCCTGGAAGAATAGAACGTCGCTGCCGTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGAGGTTCTACCGCAGCGGCGGGGGAACTCCAAGTGa                                                                                                                                    >  1:59916/1‑149 (MQ=255)  tAAGGCTCTTCCTGGAAGAATAGAACGTCGCTGCCGTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGCGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGat                                                                                                                                   <  1:104739/149‑1 (MQ=255)    aGGGTCTACCTGGAAGAATAGTACCTGGGTGTCGGGACGGGACGGGGATAATGCCACCTCTGGTGAAGGAGTCGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGTGGGAACTCCAAGTGatat                                                                                                                                 <  2:96691/149‑1 (MQ=255)      gCTCTTCCTGGAAGAATAGAACGTCGCTGCCGTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATcc                                                                                                                               >  2:304863/1‑149 (MQ=255)               ggAAGAATAGAACGTCGCTGCCGTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGCACTCCAAGTGATATCCATCATCCCa                                                                                                                      >  2:232198/1‑149 (MQ=255)                     aTAGAACGTCGCTGCCGTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGt                                                                                                                <  1:249168/149‑1 (MQ=255)                                    cGTGACGTTATGCGGATAAAGCTACCTCTGGTGAAGGAGTAGGCGAAGCCGTCTTGATGGGATTGAAAATGGGCGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCATGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATcc                                                                                                 >  2:336885/1‑149 (MQ=255)                                     gTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGACGAACTCCAAGTGCTATCCCTCATCGCATCCAGTGCGCCCGCTTTATccc                                                                                                >  2:221962/1‑149 (MQ=255)                                        aggTTATGCGGATAAGGCTACCTCTGGGGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGc                                                                                             <  2:409353/147‑1 (MQ=255)                                                  gATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCgggg                                                                                   >  2:330079/1‑149 (MQ=255)                                                    tAATGCTACCTCTGGTGAAGGAGTTGGCGAATGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGaa                                                                                 <  1:39188/149‑1 (MQ=255)                                                       tGCCACCTCTGGGCAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGCGCTGGGAGTTCTACCGCACAGCCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAacac                                                                              <  1:139656/149‑1 (MQ=255)                                                             ctctGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGt                                                                        >  1:210329/1‑149 (MQ=255)                                                                    gAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTCCCGCGGAAACGGGGTAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGt                                                                 >  2:395701/1‑149 (MQ=255)                                                                    gAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGt                                                                 >  1:83737/1‑149 (MQ=255)                                                                        gAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGaaa                                                             >  1:244057/1‑149 (MQ=255)                                                                           ttGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAAtct                                                          <  2:83737/149‑1 (MQ=255)                                                                                             tGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTAATATCCATCGTCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAACTCTCACCGTCGTTGCCGGttt                                        >  1:388015/1‑149 (MQ=255)                                                                                                 tttGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATcc                                    >  1:167556/1‑149 (MQ=255)                                                                                                 tttGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATcc                                    >  1:146277/1‑149 (MQ=255)                                                                                                     aaaaTGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCctgc                                >  1:391259/1‑149 (MQ=255)                                                                                                       aaTGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCctgctg                              <  1:65714/149‑1 (MQ=255)                                                                                                                     gTTCTACCGCAGCGGCGGGGGAACTCCAAGTTATATCCATCATCGGATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAActct                <  1:195335/149‑1 (MQ=255)                                                                                                                         tACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGAGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGGGCGGGGAAATCTCGGt            >  1:392689/1‑149 (MQ=255)                                                                                                                                 agGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTGCAGGCGt    >  1:239010/1‑149 (MQ=255)                                                                                                                                  ggcgggcgCACTCCAAGTGATATCCATCATGGCAGCCAGTGCGCCCGGTTTATCCGCGCTGATGCGGGCAACACCAGCGGCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGtt   <  2:234365/149‑1 (MQ=255)                                                                                                                                   gCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTg  >  1:305583/1‑149 (MQ=255)                                                                                                                                        |                                                                                                                                                ATAAGGCTCTTCCTGGAAGAATAGAACGTCGCTGCCGTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTG  >  NC_000913_3_pae_pgi/2877527‑2877805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.