New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1224228 =	16 (0.680)	4 (0.180)	4/264	2.6	23.0%	intergenic (+321/+51)	ycgI/minE	pseudogene/cell division topological specificity factor
	?	NC_000913_3_pae_pgi	1224254 =	12 (0.550)					intergenic (+347/+25)	ycgI/minE	pseudogene/cell division topological specificity factor

TTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTAAAGGGGGAGGTGGAAATAGCAATGAGGAGTATCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTCAAGAATAGAAATATCGCCATCTTTTTGCTCAAGCTGTACGGTTACCATCTCAGGATCAATTTGTAC  >  NC_000913_3_pae_pgi/1224109‑1224386                                                                                                                                                  |                                                                                                                                     ttttgttttgTGCGTGGGAACAGCCTTAAGGTGTAAAGGGGGAGGTGGAAATAGCAATGAGGAGTATCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGGGGGATGAAAACCTCAAGGCAGAGATAACTCTGCCTTGAAGAt                                                                                                                                   >  1:166303/1‑149 (MQ=255)              gTGGGAACAGCCTTAAGGTGTAAAGGGGGAGGTGGAAATAGCAATGAGGAGTATCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATACGCTTTTa                                                                                                                      >  1:179141/1‑149 (MQ=255)                          ttAAGGTGTAAAGGGGGAGGGGGAAATAGCAATGAGGAGTATCAGCAAGAAGAATCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTAt                                                                                                          <  2:23718/149‑1 (MQ=255)                             aGGTGTAAAGGGGGAGGTGGAAATAGCAATGCGGAGTAGCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGACAGAGATAACTCTGCCTTGAAGATAAATGCGCTGTTACAGCGGGCTTATTTc                                                                                                       >  2:180192/1‑149 (MQ=255)                               gagtAAAGGGGGAGGTGGAAAAAGCAATGAGGAGTATCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGTCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAg                                                                                                     <  2:410100/147‑1 (MQ=255)                                tgtAAAGGGGGAGGTGGAAATAGCAATGAGGAGTATCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGc                                                                                                    >  2:300788/1‑149 (MQ=255)                                                  aaTAGCAATGAGGAGTATCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAg                                                                                  >  1:162809/1‑149 (MQ=255)                                                         tgaacgtgaccttaccggaagcagaagagctgaaataagcccgctgtaaaagcgcatttatctTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCggg                                                                                                               <  1:34109‑M1/50‑1 (MQ=255)                                                         tgaacgtgaccttaccggaagcagaagagctgaaataagcccgctgtaaaagcgcatttatctTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCggg                                                                                                               >  2:34109‑M1/64‑113 (MQ=255)                                                                gTATCATCAAGAATACTCGCCGCTTTACCAAAACCTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTc                                                                    <  1:320205/149‑1 (MQ=255)                                                                 tATCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTCa                                                                   >  1:271628/1‑149 (MQ=255)                                                                                  gccgcTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTCAAGAATAGAAATATCGcc                                                  >  2:257734/1‑149 (MQ=255)                                                                                     gcTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTCAAGAATAGAAATATCGCCATc                                               >  1:220932/1‑149 (MQ=255)                                                                                                cccgctgtaaaagcgcatttatcttcaaggcagagttatctctgccttgaAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCa                                                                        <  1:34109‑M2/63‑1 (MQ=255)                                                                                                cccgctgtaaaagcgcatttatcttcaaggcagagttatctctgccttgaAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCa                                                                        >  2:34109‑M2/51‑113 (MQ=255)                                                                                                                             ccacagaTAACCCTGCCTTCAAGATAAATGCCCCTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTCAAGAATAGAAATATCGCCATCTTTTTGCTCAAGCTGTACGGTTACCATCTCAGGATCAAtt       <  2:166303/145‑1 (MQ=255)                                                                                                                              CAGAGATAACCCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTCAAGAATATAAATATCGCCATCTTTTTGCTCAAGCTGTACGGTTACCATCTCAGGATCAAttt      >  1:125150‑M1/1‑149 (MQ=255)                                                                                                                                  GATAACTCTGCCTTGATGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTCAAGATTAGAAATATCGCCATCTTTTTGCTCAAGCTGTACGGTTACCATCTCAGGATCAATTTGTAc  >  2:271628‑M1/1‑149 (MQ=255)                                                                                                                                   ttatctctgccttgaAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCg                                                                                       >  2:170413‑M2/16‑63 (MQ=255)                                                                                                                                   ttatctctgccttgaAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCg                                                                                       <  1:170413‑M2/48‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                     TTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTAAAGGGGGAGGTGGAAATAGCAATGAGGAGTATCAGCAAGAATACTCGCCGCTTTACCACAACGTGGATGAGAGGGATGAAAAACTCAAGGCAGAGATAACTCTGCCTTGAAGATAAATGCGCTTTTACAGCGGGCTTATTTCAGCTCTTCTGCTTCCGGTAAGGTCACGTTCAGCTCAAGAATAGAAATATCGCCATCTTTTTGCTCAAGCTGTACGGTTACCATCTCAGGATCAATTTGTAC  >  NC_000913_3_pae_pgi/1224109‑1224386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.