New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 3770645	16 (0.680)	3 (0.130)	3/272	3.1	15.7%	coding (735/1137 nt)	yibH	putative membrane fusion protein (MFP) component of efflux pump
	?	NC_000913_3_pae_pgi	= 3770654	17 (0.760)					coding (726/1137 nt)	yibH	putative membrane fusion protein (MFP) component of efflux pump
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTGAAACACCTGCCCAGGTAGCGCGTTAAACACCACTTCCGCATCATCGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGACAGTCTGCTCAAGGTTATATTTTGCTTCAGTAAGTTGCGCTCTTAAGCTCACAATCTGCGATTGCTCGCCGTT  >  NC_000913_3_pae_pgi/3770506‑3770791                                                                                                                                            |                                                                                                                                                   cGTGAAACACCTGCCCAGGTAGCGCGTTAAACACCACTTCCGCATCATCGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACAATCACCGGACGCAGCGGCAAGGCa                                                                                                                                           <  2:125764/149‑1 (MQ=255)            tgaccAGGTAGCGCGTTAAACACCACTTCCGCATCCTCGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACTATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCTGCCTTGCCGCTGCGtccgg                                                                                                                                <  2:234017/146‑5 (MQ=255)                   gTAGCGCGTTAAACACCACTTCCGCATCATCGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGGGTATGTACCTggg                                                                                                                         >  1:353626/1‑149 (MQ=255)                        gcgTTAAACACCACTTCCGCATCATCGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCAGCAAGGCAGCTGCGTATGTACCTGGGCGGAt                                                                                                                    >  1:39539/1‑149 (MQ=255)                         cgTTAAACACCACTTCCGCATCATCGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCACCTGCGTATGTACCTGGGCGGATc                                                                                                                   >  2:37570/1‑149 (MQ=255)                          gTTAAACACCACTTCCGCATCATCGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTGTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATTTACCTGGGCGGATCa                                                                                                                  <  2:338202/149‑1 (MQ=255)                                caccacTTCCGCATCATCGCCAGGTTTCAGAAGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCt                                                                                                            <  1:143674/149‑1 (MQ=255)                                          gtatcatcGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTa                                                                                                  >  1:331272/3‑149 (MQ=255)                                              catcGCCACGTTTCAGACGTAACAGCGAGTTTTGACGAAATTGGGCGACAATTTGCCGTTTTTCCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCa                                                                                              <  1:365223/149‑1 (MQ=255)                                                                    cAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGACAg                                                                        >  2:224161/1‑149 (MQ=255)                                                                              tGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGa                                                                           >  1:272114/1‑136 (MQ=255)                                                                              tGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGa                                                                           <  2:272114/136‑1 (MQ=255)                                                                                            gACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGACAGTCTGCTCAAGGTTATATTTTGCtt                                                <  1:230029/149‑1 (MQ=255)                                                                                                             gCTCGGGGATGAAGCCCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGACAGTCTGCTCAAGGTTATCTTTTGCTTCAGTAAGTTGCGCTCtt                               <  1:373013/149‑1 (MQ=255)                                                                                                              cTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGACAGTCTGCTCAAGGTTATATTTTGCTTCAGTAAGTTGCCGTCTTa                              >  2:101257/1‑149 (MQ=255)                                                                                                                    gATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGACAGTCTGCTCAAGGTTATATTTTGCTTCAGTAAGTTGCGCTCTTAAGCTca                        <  1:224161/149‑1 (MQ=255)                                                                                                                                          aGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTTCTTGGCGCGCGAATGACAGTCTGCTCAAGGTTATATTTTGCTTCGGTAAGTTGCGCTCTTAAGCTCACAATCTGCGATTGCTCGCCGtt  >  1:80166/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                   CGTGAAACACCTGCCCAGGTAGCGCGTTAAACACCACTTCCGCATCATCGCCAGGTTTCAGACGTAACAGCGAGTTTTGCCGAAATTGGGCGACAATTTGCCGTTTTTGCTCGGGGATGAAGACCATCACCGGACGCAGCGGCAAGGCAGCTGCGTATGTACCTGGGCGGATCAGTACCTGAGTAACGTAGCCATTGCTCGGCGCGCGAATGACAGTCTGCTCAAGGTTATATTTTGCTTCAGTAAGTTGCGCTCTTAAGCTCACAATCTGCGATTGCTCGCCGTT  >  NC_000913_3_pae_pgi/3770506‑3770791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.