New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	2505261 =	31 (1.320)	4 (0.180)	3/274	3.1	12.4%	coding (287/1038 nt)	ypdE	aminopeptidase
	?	NC_000913_3_pae_pgi	2505282 =	27 (1.200)					coding (266/1038 nt)	ypdE	aminopeptidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCGCCGGGACGAATTCCCGCCTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGAT  >  NC_000913_3_pae_pgi/2505116‑2505409                                                                                                                                                  |                                                                                                                                                     aTCGCCGGGACGAATTCCCGCCTGCATCACTTCGTCATAGGAGCGGGCACCAATGTCCACGCGCATGGCGCGGACGTCATTCCCCTGCCGGTCGCCCTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGCGATGCCTCCCGGCt                                                                                                                                                   >  2:158563/1‑149 (MQ=255)         gACGAATTCCCGCCTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTgg                                                                                                                                           <  1:228738/149‑1 (MQ=255)          aCGAATTCCCGCCTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGc                                                                                                                                          <  1:232127/149‑1 (MQ=255)            gAATTCCCGCCTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCgg                                                                                                                                        >  1:353468/1‑149 (MQ=255)            caagtCCCGCGTGCATCACTTCGTCATCGGCGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCCTTCCCCTGCTGGTCGCTGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCgg                                                                                                                                        <  2:143994/145‑1 (MQ=255)               ttCCCGCCTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCa                                                                                                                                     <  1:122710/149‑1 (MQ=255)               ttCCCCGCTGCATCACTTCGTCAGAGGAGCGCCCCACAATGTCCACGCGTATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCa                                                                                                                                     <  2:8671/149‑1 (MQ=255)                 cccGCCTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGc                                                                                                                                   >  1:9453/1‑149 (MQ=255)                      cTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGc                                                                                                                              <  2:73573/149‑1 (MQ=255)                      cTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGc                                                                                                                              <  1:333083/149‑1 (MQ=255)                              cTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTg                                                                                                                      >  2:257740/1‑149 (MQ=255)                                  gTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCCGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCaa                                                                                                                  <  1:333967/149‑1 (MQ=255)                                    cATAGGAGCGCGCACCAATGTCCCCGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCCGCTGGCGGGCAGCCATACGTACGTTGCCAAcc                                                                                                                >  2:119266/1‑149 (MQ=255)                                              cgcACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACAt                                                                                                      <  1:257740/149‑1 (MQ=255)                                                cACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGGGGGAAGCCATGCGTACGTTGCCAGCCGGCGGACCATCa                                                                                                    >  1:227226/1‑149 (MQ=255)                                                      tGTCCACGCGCATGGCGCTGACGTCATTCCCCGGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGcc                                                                                              <  2:276843/149‑1 (MQ=255)                                                               gcATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCgg                                                                                     <  2:353468/149‑1 (MQ=255)                                                               gcAGGGCGCTGACGGCCTTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACTTGGTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCgg                                                                                     <  1:97304/149‑1 (MQ=255)                                                                  tGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACACCAATCGCCCCTTCGCGGgag                                                                                  >  1:339170/1‑149 (MQ=255)                                                                            gTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCa                                                                        >  1:241932/1‑149 (MQ=255)                                                                                    gcTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCCGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAAt                                                                <  2:113617/148‑1 (MQ=255)                                                                                        ccGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCa                                                            <  2:142908/149‑1 (MQ=255)                                                                                                cGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTcc                                                    <  1:299223/149‑1 (MQ=255)                                                                                                      gCAGGCCTGGAATTTTGCACTCGTCACGGGTGTTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATgc                                              <  2:243194/149‑1 (MQ=255)                                                                                                       cAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATgcg                                             >  1:263684/1‑149 (MQ=255)                                                                                                              ggAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACCTCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGat                                      <  1:368799/149‑1 (MQ=255)                                                                                                                  ttttGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGatcatc                                  <  1:192580/149‑1 (MQ=255)                                                                                                                       cACTCTGCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCATCATAAAGCCCACTTCGTCCATATGCGCACAGATCATCACCtt                             <  1:223676/149‑1 (MQ=255)                                                                                                                                         aTGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGattcatt           >  2:319410/1‑149 (MQ=255)                                                                                                                                              cACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGc      >  1:240293/1‑149 (MQ=255)                                                                                                                                                 cGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGa   <  1:377241/149‑1 (MQ=255)                                                                                                                                                  ggCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAGTCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGAt  <  1:285131/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     ATCGCCGGGACGAATTCCCGCCTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGAT  >  NC_000913_3_pae_pgi/2505116‑2505409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.