Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_pae_pgi3,781,1520AG27.3% 277.3 / 35.9 163intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (89/28);  new base G (0/44);  total (91/72)
Fisher's exact test for biased strand distribution p-value = 1.05e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 164 total aligned reads displayed.

GGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGC  >  NC_000913_3_pae_pgi/3781054‑3781251
                                                                                                  |                                                                                                   
ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg                                                                                                    <  1:3230357/100‑1 (MQ=255)
 gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                   >  1:252522/1‑100 (MQ=255)
 gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                   <  2:552774/100‑1 (MQ=255)
     ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa                                                                                                >  1:5253857/1‑99 (MQ=255)
     ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa                                                                                                >  2:1870045/1‑99 (MQ=255)
       ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGACACGACACCGCACTCTTTATTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgggg                                                                                                 >  2:5083069/1‑96 (MQ=255)
       ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                                               >  1:4344010/1‑98 (MQ=255)
       ggACCGTTCGGCGCTGTATGTACTCCCTCACGCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                                                                                             <  2:4655090/100‑1 (MQ=255)
        gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                            <  1:2748359/100‑1 (MQ=255)
          ccGTTCGGCGCTGTCTGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                                          >  2:2501213/1‑100 (MQ=255)
          ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                                          <  1:1690677/100‑1 (MQ=255)
            gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCTCTCTCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCg                                                                                        >  2:2394594/1‑100 (MQ=255)
               cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCa                                                                                      >  2:1707659/1‑99 (MQ=255)
                ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCAc                                                                                     >  1:3006985/1‑99 (MQ=255)
                ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCACTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACt                                                                                    >  1:480518/1‑100 (MQ=255)
                  cgcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCACACTg                                                                                   >  1:4203789/1‑99 (MQ=255)
                     tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTTCCCTTTCCTTTCCGGGGGGCGGGCCGGGGTGAGGGGAACAGGCCGCACTGCt                                                                                 >  1:1995822/1‑98 (MQ=255)
                       tatgtaCCCCCTCCCTCGGAACCGTCACCGCACTCTTTTTTTCGCCCCGGCCCCCCCGGGGGGCGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCa                                                                               <  2:1680136/98‑1 (MQ=255)
                         tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCaa                                                                           >  2:1431292/1‑100 (MQ=255)
                          gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCTGGGCGATCGCCTGGGTGCGGGGACAAGGCCGCACTGCTCACCAAt                                                                          >  2:1273953/1‑100 (MQ=255)
                           taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCTCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtt                                                                         >  2:3193491/1‑100 (MQ=255)
                             cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt                                                                       >  1:397997/1‑100 (MQ=255)
                              tCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTc                                                                      >  1:1152714/1‑100 (MQ=255)
                               cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                     >  2:1116290/1‑100 (MQ=255)
                               cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                     >  1:1948936/1‑100 (MQ=255)
                               cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                     >  1:4098140/1‑100 (MQ=255)
                                cccccctctGAAACGCCACCGCCCTCTTTTTTTCCCCCCCGCCCCTCCGGGGAGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                    <  1:2750888/95‑1 (MQ=255)
                                ccccACTCTGAAACGACCCCGCACTCTTTTTTCCCCCCTCCCCCCTCCGGGGGGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAAtt                                                                         <  1:915575/92‑1 (MQ=255)
                                ccccACTCGGACACGCCACCCACCTCTTTTTTTCTCCCCCGCCCCCCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                     <  1:4779659/96‑1 (MQ=255)
                                ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                    >  2:893037/1‑100 (MQ=255)
                                ccTCACGCGGTAACGACGCCGCACTCTTTTTTTCCCCCTCGCCCCCCCGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGc                                                                                  <  2:4856695/86‑1 (MQ=25)
                                 cTCCCTCTGAAACGACCCCGCACTTTTTTTTTCCCCCTCGCCCCCCGGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                   <  1:201071/100‑1 (MQ=37)
                                 cTCACCCGGAACCGACACCGCACTCTTTTTTTCTCCCTCGCCCCCCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                   <  2:1184691/100‑1 (MQ=255)
                                  ccACTCGGAACCGACCCCGCACTCTTTTTTTCGCCCTCGCCCCCCGGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                  <  2:147372/99‑1 (MQ=255)
                                   cACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCACTTTTCTGc                                                                   >  1:3848805/1‑98 (MQ=255)
                                    aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCCCCAATTTTCTGCTAt                                                                >  2:446768/1‑100 (MQ=255)
                                     ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                               >  2:5175564/1‑100 (MQ=255)
                                     ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGCGAGAGGGCCGGGGTGAGGGGAAAAGGCGGCACTCCTCACCAATTTTCTGCTATc                                                               >  2:1521255/1‑100 (MQ=255)
                                         gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                                           >  2:859370/1‑100 (MQ=255)
                                         gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                                           >  1:1535933/1‑100 (MQ=255)
                                          aaaCGACACCGCACTCTTTTTTCCCCCCTCGCCCCCCCGGGGAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                            <  1:3581612/98‑1 (MQ=39)
                                           aaCGACACCGCACTCTTTTTTTCTTTTTTTTCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                         >  2:2266669/1‑100 (MQ=255)
                                           aaCGACACCGCACTCTTTTTTTCTTTTTTGTTCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                         >  2:5192510/1‑100 (MQ=255)
                                           aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                         >  2:3310184/1‑100 (MQ=255)
                                           aaCGACACCGCACTCTTTTTTTCTCACTCGCCCCTCCGGGGACAGTGCCGGGGTGAGGGGAAAAGGCCGCATTTCTCACCAATTTTCTGCTATCCTGccc                                                         >  2:1006536/1‑100 (MQ=255)
                                            aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                        >  1:2176968/1‑100 (MQ=255)
                                             cGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                        >  2:3110028/1‑99 (MQ=255)
                                                  ccGCCCTCTTTTTTTCCCCCTCGCCCCTCCGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                                  <  1:3166711/100‑1 (MQ=38)
                                                  ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGTCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                   >  1:5109509/1‑99 (MQ=255)
                                                  ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                   >  1:30672/1‑99 (MQ=255)
                                                  ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                   >  1:1658158/1‑99 (MQ=255)
                                                   cGCCCTCTTTTTTTCTCCCTCGCCCCTCGGGGGAGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc                                                     <  1:4942548/96‑1 (MQ=255)
                                                   cGCCCTCTTTTTTTCCCCCCCGCCCCTCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGATATCCTGCCCCCGCa                                                    <  2:4355049/97‑1 (MQ=255)
                                                   cGCACTCTTTTATTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGATGAGGGGAAAAGGCCGCACTACTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                                  >  2:4391863/1‑99 (MQ=255)
                                                       ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGTGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCTCGCACTAAggg                                             >  2:3353104/1‑100 (MQ=255)
                                                       ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                             >  2:2021752/1‑100 (MQ=255)
                                                         ctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                           >  2:3011752/1‑100 (MQ=255)
                                                         ctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                           >  2:4482772/1‑100 (MQ=255)
                                                           ttttttCCCCCTCGCCCCTCCGGGGAGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCAcc                                                                             <  1:1130576/64‑1 (MQ=25)
                                                            tttttCTCCCGCGCCCCTCGGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa                                                    <  2:433199/88‑1 (MQ=255)
                                                            tttttCCCCCCCGCCCCTCGGGGGGGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                          <  1:163608/98‑1 (MQ=255)
                                                             ttttCCCCCCCGCCCCTCCGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                        <  2:1818251/99‑1 (MQ=39)
                                                              tttCCCCCTCGCCCCCCCGGGGGGGGGGCGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                       <  1:1467434/99‑1 (MQ=255)
                                                                tcccccGCGCCCCCCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                            <  2:2787899/89‑1 (MQ=255)
                                                                 ctcCCTCGCCCCTCGGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                                    <  1:234725/99‑1 (MQ=255)
                                                                  ccccTCGCCCCTCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                   <  1:986686/98‑1 (MQ=255)
                                                                   ccccCGCCCCTCGGGGGGGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                 <  1:860947/100‑1 (MQ=255)
                                                                   cccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                  >  1:4234840/1‑99 (MQ=255)
                                                                    ccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTGACCAATCTTCTGCTATCCTGCCCCCGCCCTAAGGGGGCAGTGTGc                                   >  2:3246271/1‑97 (MQ=38)
                                                                    ccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                 >  1:4459077/1‑99 (MQ=255)
                                                                         ccccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc                           >  1:420026/1‑100 (MQ=255)
                                                                           ccTCGGGGGGGGGGGCGGGGTGGGGGGGCAAAGCCCGAACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                         <  1:5181477/100‑1 (MQ=255)
                                                                           ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTAACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                          >  2:3120527/1‑99 (MQ=255)
                                                                            cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                        >  1:1234666/1‑100 (MQ=255)
                                                                                 gggAGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                   <  1:129403/100‑1 (MQ=255)
                                                                                 gggAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                               <  2:4767780/72‑1 (MQ=255)
                                                                                 gggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt                    <  2:1150750/99‑1 (MQ=255)
                                                                                  ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                  >  1:2803577/1‑100 (MQ=255)
                                                                                  ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                  >  1:2803619/1‑100 (MQ=255)
                                                                                    ggggggCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa                <  1:1869695/97‑1 (MQ=255)
                                                                                    ggggggCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa                <  1:2281781/97‑1 (MQ=255)
                                                                                     gagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa               >  1:37145/1‑100 (MQ=255)
                                                                                     gagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa               >  2:4664826/1‑100 (MQ=255)
                                                                                      ggggCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa                <  1:3647960/97‑1 (MQ=255)
                                                                                      cgggCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTCTGCTAAACATCGTACTTTACGAAc              >  2:4873060/2‑100 (MQ=255)
                                                                                       gggCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc              >  2:398010/1‑99 (MQ=255)
                                                                                       gggCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc              >  2:4114544/1‑99 (MQ=255)
                                                                                        ggCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc             <  1:3545800/99‑1 (MQ=255)
                                                                                        ggCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc             <  1:3028430/99‑1 (MQ=255)
                                                                                         gcgggggTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                                    <  2:2574200/72‑1 (MQ=255)
                                                                                         gCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc              >  1:976568/1‑97 (MQ=255)
                                                                                           cGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa          >  1:1588867/1‑99 (MQ=255)
                                                                                           cGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTc                                                                      <  2:530192/39‑1 (MQ=37)
                                                                                             ggggGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt       <  2:3764750/100‑1 (MQ=255)
                                                                                             gggTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaaa        <  1:125934/99‑1 (MQ=255)
                                                                                             gggTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc             <  1:537557/94‑1 (MQ=255)
                                                                                             gggTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt       <  2:3401872/100‑1 (MQ=255)
                                                                                             gggTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt       >  1:273245/1‑100 (MQ=255)
                                                                                                 gAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg   >  1:4684899/1‑100 (MQ=255)
                                                                                                 gAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg   >  2:349322/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
GGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGC  >  NC_000913_3_pae_pgi/3781054‑3781251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑