Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913_3_pae_pgi | 3,781,140 | 0 | A | G | 22.1% | 287.2 / 13.1 | 143 | intergenic (+123/‑75) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
Reads supporting (aligned to +/- strand): ref base A (77/32); new base G (0/31); total (79/64) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.08e-14 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 153 total aligned reads displayed.
CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAA > NC_000913_3_pae_pgi/3781042‑3781238 | ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag < 1:4164881/100‑1 (MQ=255) ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag < 2:3072980/100‑1 (MQ=255) ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag < 2:3806607/100‑1 (MQ=255) ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag < 1:1768585/100‑1 (MQ=255) ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAgg < 2:1813606/100‑1 (MQ=255) ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc > 1:4779609/1‑100 (MQ=255) ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAggga < 1:1116476/97‑2 (MQ=255) ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc < 2:1685384/98‑1 (MQ=255) ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCg < 1:1645324/99‑1 (MQ=255) cTCAGGGGGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg < 2:1935886/100‑1 (MQ=255) cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg > 2:3193844/1‑100 (MQ=255) tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg > 1:1660747/1‑99 (MQ=255) aGGGAGTGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACGCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 2:4983335/98‑1 (MQ=255) aGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 2:5107269/1‑99 (MQ=255) ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg < 1:1690581/100‑1 (MQ=255) ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg < 1:3230357/100‑1 (MQ=255) ggAGAGGGGACCGGTCGGCGCTGTATGTACGCCCTCGCGCTGAAACGACGCCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 2:2693505/96‑1 (MQ=38) gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg < 2:552774/100‑1 (MQ=255) gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgggg < 1:1538593/100‑1 (MQ=255) ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa > 1:3573248/1‑99 (MQ=255) ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaa > 1:4344010/1‑98 (MQ=255) ggACCGTTCGGCGCTGTATGTACTCCCTCACGCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa < 2:4655090/100‑1 (MQ=255) gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg < 1:2748359/100‑1 (MQ=255) ncGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc > 2:3128076/2‑100 (MQ=255) cGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc > 2:1118450/1‑99 (MQ=255) cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCa > 2:1707659/1‑99 (MQ=255) ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCAc > 1:3006985/1‑99 (MQ=255) ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCACTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACt > 1:480518/1‑100 (MQ=255) cgcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCACACTg > 1:4203789/1‑99 (MQ=255) tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTTCCCTTTCCTTTCCGGGGGGCGGGCCGGGGTGAGGGGAACAGGCCGCACTGCt > 1:1995822/1‑98 (MQ=255) gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGCAAAGGCCGCACTGCTCAc > 2:4275623/1‑100 (MQ=255) tatgttCTCCCTCACTCTGAAACGACACCGCGCTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg < 2:2556637/75‑1 (MQ=255) tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCaa > 2:1431292/1‑100 (MQ=255) gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCTGGGCGATCGCCTGGGTGCGGGGACAAGGCCGCACTGCTCACCAAt > 2:1273953/1‑100 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt > 1:397997/1‑100 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 2:1116290/1‑100 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:1948936/1‑100 (MQ=255) cccccctctGAACCGACCCCGCCCTCTTTTTTTCTCCCCCGCCCCCCCGGGGAGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg < 1:3022833/95‑1 (MQ=255) cccccctctGAAACGCCACCGCACTCTTTTTTTCCCCCCCCCCCCCCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCACTTTTCTg < 2:5196991/95‑1 (MQ=255) cccccctcgGAACCGCCCCCGCACTCTTTTTTCCCCCCCCCCCCCTCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg < 1:523011/95‑1 (MQ=255) ccccACTCTGAAACGACCCCGCACTCTTTTTTCCCCCCTCCCCCCTCCGGGGGGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAAtt < 1:915575/92‑1 (MQ=255) ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg > 2:893037/1‑100 (MQ=255) cTCCCTCTGAAACGACCCCGCACTTTTTTTTTCCCCCTCGCCCCCCGGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc < 1:201071/100‑1 (MQ=37) cTCACCCGGAACCGACACCGCACTCTTTTTTTCTCCCTCGCCCCCCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc < 2:1184691/100‑1 (MQ=255) ccACTCGGAACCGACCCCGCACTCTTTTTTTCGCCCTCGCCCCCCGGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCt < 2:147372/99‑1 (MQ=255) aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCCCCAATTTTCTGCTAt > 2:446768/1‑100 (MQ=255) aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt > 2:3350271/1‑100 (MQ=255) ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGCGAGAGGGCCGGGGTGAGGGGAAAAGGCGGCACTCCTCACCAATTTTCTGCTATc > 2:1521255/1‑100 (MQ=255) tGAACCGCCGCCGCACTCTTTTTTTCCCCCCCGCCCCCCCGGGGGGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc < 2:310447/98‑1 (MQ=255) tGAAACGACACCGCACTCTTTTTTTCTCCTTCTCCCCTCCGGGGACAGGGCCGGGTTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg > 2:5064722/1‑100 (MQ=255) gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 2:4420369/1‑100 (MQ=255) gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:1535933/1‑100 (MQ=255) gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 2:859370/1‑100 (MQ=255) aaaCGACACCGCACTCTTTTTTCCCCCCTCGCCCCCCCGGGGAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg < 1:3581612/98‑1 (MQ=39) aaCGACCCCGCACTCTTTTTTTCCCCCTCGCCCCTCCGGGGAGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc < 1:3833632/100‑1 (MQ=38) aaCGACACCGCACTCTTTTTTTCTTTTTTTTCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc > 2:2266669/1‑100 (MQ=255) aaCGACACCGCACTCTTTTTTTCTTTTTTGTTCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc > 2:5192510/1‑100 (MQ=255) aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc > 2:3310184/1‑100 (MQ=255) aaCGACACCGCACTCTTTTTTTCTCACTCGCCCCTCCGGGGACAGTGCCGGGGTGAGGGGAAAAGGCCGCATTTCTCACCAATTTTCTGCTATCCTGccc > 2:1006536/1‑100 (MQ=255) aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc > 1:2176968/1‑100 (MQ=255) ccGCCCTCTTTTTTTCCCCCTCGCCCCTCCGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt < 1:3166711/100‑1 (MQ=38) ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGTCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc > 1:5109509/1‑99 (MQ=255) cGCCCTCTTTTTTTCTCCCTCGCCCCTCGGGGGAGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc < 1:4942548/96‑1 (MQ=255) cGCACTCTTTTATTCTCCCTCGCCCCTCCGGGGAGTGGGCCGGGATGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTCCTATCCTGCCCCCGCACt > 2:4391131/1‑99 (MQ=255) ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg > 2:2011090/1‑100 (MQ=255) ctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg > 1:2435208/1‑100 (MQ=255) ctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg > 2:3011752/1‑100 (MQ=255) ttttttCCCCCTCGCCCCTCCGGGGAGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCAcc < 1:1130576/64‑1 (MQ=25) tttttCTCCCGCGCCCCTCGGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa < 2:433199/88‑1 (MQ=255) tttttCCCCCTCGCCCCCCCGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg < 2:1534865/95‑1 (MQ=38) tttttCCCCCCCGCCCCTCGGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg < 1:1155656/93‑1 (MQ=38) tttttCCCCCCCGCCCCTCGGGGGGGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc < 1:163608/98‑1 (MQ=255) ttttCCCCCCCGCCCCTCCGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg < 2:1818251/99‑1 (MQ=39) tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa > 1:1299050/1‑100 (MQ=255) ttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt > 2:5158947/1‑100 (MQ=255) ccggcccTCTCCCCGGAGGGGCGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa > 1:4080097/5‑99 (MQ=38) ctcCCTCGCCCCTCGGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg < 1:234725/99‑1 (MQ=255) ctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc > 2:2210141/1‑100 (MQ=255) ccccCGCCCCTCGGGGGGGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa < 1:860947/100‑1 (MQ=255) ccccCGCCCCCCGGGGGGGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa < 1:860850/100‑1 (MQ=255) cccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt > 1:4234840/1‑99 (MQ=255) ccTCGCCCCTCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc < 1:985955/97‑1 (MQ=255) ccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa > 1:4459077/1‑99 (MQ=255) gCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt > 1:4780236/1‑100 (MQ=255) ccccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc > 1:420026/1‑100 (MQ=255) cccTGCGTGGGGGGGGCCGGGTTGAGGGGAAAAGGCCGc < 2:3221338/39‑1 (MQ=255) ccTCGGGGGGGGGGGCGGGGTGGGGGGGCAAAGCCCGAACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt < 1:5181477/100‑1 (MQ=255) ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg > 2:2978942/1‑99 (MQ=255) ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTAACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg > 2:3120527/1‑99 (MQ=255) cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa > 1:1234666/1‑100 (MQ=255) ccGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt > 2:2421043/1‑100 (MQ=255) cGGGGGGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt < 1:2748364/99‑1 (MQ=255) ggggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt > 2:4785313/1‑99 (MQ=255) ggggGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc < 2:3744218/84‑1 (MQ=255) gggAGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa < 1:129403/100‑1 (MQ=255) gggAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg < 2:4767780/72‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc > 1:2803577/1‑100 (MQ=255) ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc > 1:2803619/1‑100 (MQ=255) gagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa > 2:4664826/1‑100 (MQ=255) gagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa > 1:37145/1‑100 (MQ=255) | CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAA > NC_000913_3_pae_pgi/3781042‑3781238 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |