| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 3726897 | 64 (0.850) | 9 (0.130) | 9/248 | 8.3 | 13.8% | intergenic (+15/+27) | wecH/yiaA | O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains |
| ? | NC_000913_3_KO_pgi | = 3726905 | 54 (0.790) | intergenic (+23/+19) | wecH/yiaA | O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCCATGCGCTGCGCACCCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/3726739‑3726897‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccggtcaGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTCAATTCCCCG < NC_000913_3_KO_pgi/3726905‑3726757 ATCCATGCGCTGCGCACCCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAA < 3:462787/150‑1ATCCATGCGCTGCGCACCCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAA < 1:757923/150‑1 TCCATGCGCTGCGCACCCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAG > 3:202131/1‑150 TCCATGCGCTGCGCACCCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAG > 4:111026/1‑150 GAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCT < 2:439494/150‑1 TTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTTA < 1:251736/150‑1 gctCGACGTTGGCAGCTTGTTTGTGTCTTTATATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTTATTTAACTCATTAATCTGTTTCTGTCGATTCGTTGTACCA < 1:768093/147‑1 TGGTAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCT > 1:560404/1‑124 TGGTAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCT < 2:560404/124‑1 AGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTT < 1:200815/131‑1 AGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTT > 2:200815/1‑131 TTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTT < 3:330169/83‑1 TTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCAGTCCAATGTGACCGGGCTTTT > 4:330169/1‑83 AAGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCTCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCT < 2:363240/150‑1 AAGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCT > 1:645154/1‑150 AGCCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTC < 1:609181/150‑1 CCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTCAA > 4:385183/1‑150 CCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAA < 2:438098/109‑1 CCCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAA > 1:438098/1‑109 CCGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTCAAT > 2:200585/1‑150 CGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAA < 3:233212/95‑1 CGGTCAGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAA > 4:233212/1‑95 AGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTCAATTCCCCG < 3:481663/150‑1 ATCCATGCGCTGCGCACCCGGGGAATTGAGCTTAAAAATTGGCCAATACTGGATATTATTTGGATCTTTTGCGCGACGTTGGCAGCGAGTTTGTTACTTTCTATGCTGGTACAACGAATCGACAGAAACAGATTAGTGAGTTAAGTAAAAGCCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/3726739‑3726897‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccggtcaGTCCAATGTGACCGGGCTTTTACTTAACTCACTAATCTGTTTCTGTCGATTCGTTGTACCAGCATAGAAAGTAACAAACTCGCTGCCAACGTCGCGCAAAAGATCCAAATAATATCCAGTATTGGCCAATTTTTAAGCTCAATTCCCCG < NC_000913_3_KO_pgi/3726905‑3726757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |