New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1018972 =	51 (1.130)	5 (0.120)	5/268	5.6	9.9%	intergenic (+35/+41)	matP/ompA	Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
	?	NC_000913_3_bme_pgi	1018998 =	44 (1.050)					intergenic (+61/+15)	matP/ompA	Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTCACAGGTGTTGCCAGTAACCGGGTT  >  NC_000913_3_bme_pgi/1018850‑1019144                                                                                                                                                      |                                                                                                                                                   agctGAAGGTGCAGAAAACAAAAAAAAAAAATCAAAGAAAATGTCTCCCTTGAAGCAGGATCTGCAGGCATTGCTGGGCAAGGACTAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAACACCCCGCAGCAGCGGGGTTTTTc                                                                                                                                                    <  2:47371/146‑1 (MQ=255)    tGAAGATGCGGAAAACAAAGAGAAATACGCGAATAGAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTAc                                                                                                                                                 <  2:213624/149‑1 (MQ=255)             ggAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACgaga                                                                                                                                        >  2:699425/1‑149 (MQ=255)              gAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGaa                                                                                                                                       <  1:498046/149‑1 (MQ=255)                aaaCACAGAGAAATGCGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGAAAGCATGGCTGGATAAGGAATATCTGACGAGAGGCAGTTCAAGTTAGTAAAGGC‑AAATAAACCACCTCTGCAGCGGAGTGTATCTAACAGACGaaaaat                                                                                                                                     >  2:449255/1‑147 (MQ=255)                     aaGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGCACTTAAGc                                                                                                                                >  1:704557/1‑149 (MQ=255)                          aaaTACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCg                                                                                                                           <  1:529364/149‑1 (MQ=255)                               cgcgAATAAAATGTCTCCTCTTAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGa                                                                                                                      <  1:2658/149‑1 (MQ=255)                                  gAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAACCTGCGGCTGAGtt                                                                                                                   >  1:145969/1‑149 (MQ=255)                                   caTAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTGAAGGC‑AAAAAAAACTCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTa                                                                                                                  >  2:607441/2‑149 (MQ=255)                                        aaTGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACACGCACTTAAGCCTCCGCCTCAGTCACAACg                                                                                                             >  2:144632/1‑149 (MQ=255)                                         aTGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACg                                                                                                             >  1:196871/1‑149 (MQ=255)                                           gTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCt                                                                                                          >  1:592867/1‑149 (MQ=255)                                              ttctCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGCGAACTTAAGCCTGCGGCTGAGTTACAAAGTCTTTg                                                                                                       >  1:235872/1‑149 (MQ=255)                                               agtaagAAGCAGCATCTGAAGGCAGTGCTGGGTAAGGAATAACTGACGAAAGTAAGTTCAAAAAAAAAAAAAA‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGa                                                                                                      <  2:593789/144‑1 (MQ=255)                                                  ctGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATAc                                                                                                   <  1:699425/149‑1 (MQ=255)                                                  ctGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACACTGCATCATCGGGTTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATAc                                                                                                   <  1:351912/149‑1 (MQ=255)                                                    gAAGCAGGATCTGTAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACTATGCGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCt                                                                                                 <  2:735439/149‑1 (MQ=255)                                                      aGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCttt                                                                                               >  1:249540/1‑149 (MQ=255)                                                            aTCTGCAGGCATGGCTGGGAAAGGAATAACTGACGAAAGACAGCTCAAATTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCCGGGTTTCTCTACCAGCCGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACCTc                                                                                         >  2:450508/1‑149 (MQ=255)                                                              cTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGa                                                                                       <  2:592905/149‑1 (MQ=255)                                                                  aGGCATTGCTGGGGAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCGGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCAGAGTTACAACGTCGTTGGTACCTTTAACTTCGAtgtt                                                                                   >  2:10476/1‑146 (MQ=255)                                                                   ggCATTGCTGGTTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATctct                                                                                  <  1:61952/149‑1 (MQ=255)                                                                       ttGCAGTGTAAGTAATAACGGACGAAGGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTGTCGACCAGCCGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTAcgc                                                                              <  2:342126/149‑1 (MQ=255)                                                                              gTAAGGAATAACTGACGAAAGGTAGTTCAATTTACTAACTGC‑CAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATc                                                                       <  2:507840/149‑1 (MQ=255)                                                                               tAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGACACACAAACTACGTCCTCGGTACCTTTAACTTCGATCTCTACGCGACGATcc                                                                      >  2:84986/1‑149 (MQ=255)                                                                                aaGGAATAACTGACGAGATTAAGTTCACTTTACTAAAGGT‑AAAAAAAACCCCGCAGCTGCGGGGTTTTTCTACCAGACGAGAACTTAGGTCTGCACCGGAGTTATAATGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCg                                                                     <  2:291195/149‑1 (MQ=255)                                                                                   gAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAg                                                                  >  1:564323/1‑149 (MQ=255)                                                                                   gAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGAGACCTTTAACTTCGATCTCTACGCGACGATCCGGAg                                                                  >  1:395387/1‑149 (MQ=255)                                                                                      tAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATATCTACGCGACGATCAGGAGCCa                                                               >  1:198192/1‑149 (MQ=255)                                                                                       aaCTGACGAAAGTCAGTTCAATTTACGAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTATAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAg                                                              <  2:779671/149‑1 (MQ=255)                                                                                            aCGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCCGCGGCGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCGTTAACTTCGCTCTCTACGCGACGATCCGGAGCCAGGCAGt                                                         <  1:708836/149‑1 (MQ=255)                                                                                              gAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCg                                                       >  1:638284/1‑149 (MQ=255)                                                                                                   tCAGTTCAATTTGCTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAAACGAGAACTTAAGCCTGCGGCTGAGTTAGAACGTCTTTGATACCTTTAACTTCGATCTCTAAGCGACGATCCGGAGCGACGCAGTCGATCaa                                                  >  1:321010/1‑148 (MQ=255)                                                                                                                   aaGGC‑AAAAAAAACCCCGCAGCAGGGGGGTGTTTCTACCAGACGAGAACATAAGCCTGGGGCAGAGGTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCCGCGCCGCGCAGTCGATCCGTGCAGAACGCTGttgc                                  >  2:369411/1‑147 (MQ=255)                                                                                                                   aaGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCCCCCTGTTTc                                  >  2:252344/1‑149 (MQ=255)                                                                                                                      gcaaaaaaaaaCCCCGCATCAGCGGGGTTTTTCTACCAGTCGAGTACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGAAACCTTTAACTTCGATCTCTACGCGATGATCCGGAGCCAGGCAGCCGATCAGTGCAGCACGCTGTTTCAc                                <  1:608134/146‑1 (MQ=255)                                                                                                                      gC‑AAAAAAAACCCCGCAGCAGCGGGGCTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGCAGATCCGGCGCCAGGCCGTCGATCAGTGCAGCACGCTATTTCACg                               >  2:122535/1‑149 (MQ=255)                                                                                                                         caaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTTTTTCACGtt                             <  2:617993/148‑1 (MQ=255)                                                                                                                         aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCTGATCCAGGCAATCGATCAGTGCAGCACGCTATTTCACGtt                             >  2:701366/1‑149 (MQ=255)                                                                                                                            aaaaaCCCCGCTGCTGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGCCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGCCGATCCGCAGCCAGGCAGCCGACCAGTGCAGCACCCCGCTTCACGTtctc                          >  2:229516/1‑149 (MQ=255)                                                                                                                                  cccGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTCACAGgt                    <  2:145178/149‑1 (MQ=255)                                                                                                                                    cGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTCACAGgtgt                  >  1:8885/1‑149 (MQ=255)                                                                                                                                    cGCAGCAGCGGGGTTTTGCTACCAGACCAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTCACAGgtgt                  <  1:300730/149‑1 (MQ=255)                                                                                                                                         cagcGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGACTGAGTTACAACGTCTTTGATAGCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTCACAGGTGTTGCCa             <  2:655427/149‑1 (MQ=255)                                                                                                                                                gTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTAACAGGTGTTCCCAGTAACCg      >  2:378209/1‑149 (MQ=255)                                                                                                                                                    ttcttcCAGACGAGAACTCAAGCCGGCGGCTGAGTGACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGCTCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTCACAGGTGTTGCCAGTAACCGGGtt  <  2:181470/149‑1 (MQ=255)                                                                                                                                                    ttCTACCAGACGAGAACTTAAGCCTGCGGTTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGTTCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTCACAGGTGTTGCCAGTAACCGGGtt  <  2:27712/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTCACAGGTGTTGCCAGTAACCGGGTT  >  NC_000913_3_bme_pgi/1018850‑1019144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.