New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_bme_pgi | 2304955 = | 45 (0.850) | 4 (0.080) | 4/272 | 7.8 | 8.2% | noncoding (539/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
? | NC_000913_3_bme_pgi | = 2431012 | NA (NA) | noncoding (84/84 nt) | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
AATGGCGCTGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTGG > NC_000913_3_bme_pgi/2430864‑2431158 | aaTGGCGCTGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGc < 1:658046/149‑1 (MQ=255) gcTGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGccc > 2:997138/1‑149 (MQ=255) aaaTATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACGACCGTATTaa > 1:972437/1‑149 (MQ=255) ttCAACGCCATCGACTTTTTATGCCTTTGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCgg < 2:833025/149‑1 (MQ=255) aaCGCCATCGACTTTTTATGCC‑TTACAGCATCTCAATAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGGGTAGGCCTGATAAGACGCGCCCGCGTCGCATCCGGCATGACCGCATGCATTCGGCgg > 2:723697/1‑148 (MQ=21) gACTTTTTATGCCTTTGCGACATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTGTACCCCTGCGTAGGCCTGAAAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTAGTCATTCCGCGTACAGCCCAt > 2:76426/1‑149 (MQ=37) tttGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACtt > 1:111620/1‑149 (MQ=255) tttGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACtt > 2:769864/1‑149 (MQ=255) tttGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCAACtt > 2:254178/1‑149 (MQ=255) tttGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTACCCGACCTACGGTTCTACCCCTCCGTAGGCCTGATAAGACCCGCCACCGTCGCATCCGACAAGACCGTCTTAATTCGGCGTATAACCCATCACCACGccccct > 2:140624/1‑145 (MQ=37) ttcGGCATC‑GGTCAATGCGTGTCGGATGCGGCGTAAACGCCTTATTCGACCTACGGTTCTACCCCGGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTaa < 1:478775/147‑1 (MQ=255) gCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAg < 1:537810/149‑1 (MQ=255) cATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAg > 1:802093/1‑149 (MQ=255) cATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGAGTATAGCCCATTACCACGCCACTTAAGCAAg > 1:311735/1‑149 (MQ=255) c‑GGGTAATGCTGGTCGGATGCGGCGTAACCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGaaa < 1:381683/149‑1 (MQ=255) ggCACTGCGTGTCGGATGCGGCGTAAACAACTTATCCGACAAACAGTTCAACCACTGCTTAGGCCTGATACGACGCGCCACCGACGCATCAGACAAGACCCAATTCATTCGGCGTATACCCCATTAACACGCCACTTAAGCCAAAAAgc > 2:4176/1‑148 (MQ=255) aaTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCCGAAAGTTGc > 2:29865/1‑149 (MQ=255) aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCt < 1:164693/149‑1 (MQ=255) tGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCtt < 1:976846/149‑1 (MQ=255) gtgtCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCaa < 1:933325/149‑1 (MQ=255) gtgtAGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAGGACCTTAGTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCaa < 1:705473/149‑1 (MQ=255) aggtCGGATAAGGCGTTTACGCCGCATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCTGAACATTGCTTCaa > 2:124548/3‑149 (MQ=38) gATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGGCGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCAATTAAGCCAGAAAGTTGCTTCAACTCAcc < 2:598110/149‑1 (MQ=255) cggcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGc < 1:1006717/149‑1 (MQ=255) cggcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGc < 1:975294/149‑1 (MQ=255) gcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAACAAGAAAGTAGCATCAACAGACCCAGCGa > 1:608581/1‑149 (MQ=38) aCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCATCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCttt < 2:762784/149‑1 (MQ=255) ccTTATCCGACCTACTGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAg < 1:160065/149‑1 (MQ=255) ccTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAg < 1:675076/149‑1 (MQ=255) cTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATCGCCCCTTACCACCCCCATTAAGCCAGAAAGTTGCTTCAACTCCCCCAGCGCACCTTTCAGc > 2:916129/1‑149 (MQ=38) cTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACACGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAACCCAGAAAGTTGCTTCAACTCACCCAGCCAACCTTTCAGc > 2:186243/1‑149 (MQ=255) ccGACCTACGGGTTTACCCCTGCGTAGGCCTGATAAGACGGGGCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGTATAGCCCATTAGCACGCCACTTAAGCCAGTAAGTTGCTTCAACTGATCCAGAGAACCTTTCAGCTTATc < 2:497156/149‑1 (MQ=255) actgaccgTTCTCCCCCTTCGCAGGCCTGAGAACACGCGCCAGCGTCGCATCAGGCAAGATCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCttt < 2:936812/142‑1 (MQ=255) ccTTCGGTTATACCTTTGTGTAGGCCTTATAAAACGGGCCAGCGACGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTc < 1:202523/149‑1 (MQ=255) ccTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTc < 2:802093/149‑1 (MQ=255) tACGTTTCTACCCCTGCGTAGGCCTGATAAGACGCGCTAGCGTCCCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGa < 2:232973/149‑1 (MQ=255) tACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGa < 2:8677/149‑1 (MQ=255) tACGGTTCTACCCCTGCGGAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGa < 2:742575/149‑1 (MQ=255) tCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGCCCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATc < 2:630828/149‑1 (MQ=255) aCCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCgg < 2:586557/149‑1 (MQ=255) aCCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCgg < 2:696119/149‑1 (MQ=255) tccGTGGGCCTTAAAAGATGCCGCGGCGTGGCATCAGGCAAGACCGTATGAATTCGGCGTATAGTCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCaa < 2:49456/147‑1 (MQ=255) aGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGa > 2:523690/1‑149 (MQ=255) ggCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCCCCCAGCCAACCTTTCAGCTTATCTTTCCCGGCCTCCGGCCCaagcgcaa > 2:396997/1‑143 (MQ=38) cgCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTACTTCGGCGTATATCTCATTACCACGCCACTTAAGTCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGaa > 2:763922/2‑149 (MQ=255) cTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATAc > 1:306183/1‑149 (MQ=255) gATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACgg < 1:655183/149‑1 (MQ=255) aTAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCACCCCACCCAGCGAACCTTTCACCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACgcg > 2:347855/1‑147 (MQ=255) gACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCTGCCAAACCAGAATACGGGTAAt > 1:844519/1‑149 (MQ=255) aCGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAAtt < 1:391401/149‑1 (MQ=255) cgcgCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAAttt < 1:769864/149‑1 (MQ=255) gcgcCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAAtttt > 2:392008/1‑149 (MQ=255) gcCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAATGTTGCTTCAACTCACCCAGCGATCCTTTCAGCTTATCTTTCGAGGCATCCGGCCTAACCTGAATACGGGTAATTTTAc < 1:927638/149‑1 (MQ=255) ccggCGTCGCCGAAGACAAGAACCTATTAATTCGACGTATATCCCATCACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAAACTTTCAGCTTATCTTTCGAGGTATCCGGCCCAACCAGAATACGGGTAATTTTAcc < 2:95393/146‑1 (MQ=255) aTCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACGTTGTAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTTGc > 1:989294/1‑149 (MQ=255) aGGCAAGATCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTg < 2:321708/149‑1 (MQ=255) aGGCAAGACCGTTGTAATTCTGCTGATAGACTAGTACCACTCCACTTAAGCCGGAAAGTTGCTTCAACTGACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCTCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTg < 2:246496/149‑1 (MQ=255) ggCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCCCCCAGCGAACCTTTCAGCTTCTCTTTCGAGGCATACGGCCCAACCAGACTACGGGTAATTTTACCCTGCACTGGCGTgg > 2:552291/1‑149 (MQ=255) | AATGGCGCTGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATC‑GGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTGG > NC_000913_3_bme_pgi/2430864‑2431158 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |