New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2304817 =	NA (NA)	4 (0.080)	4/272	7.8	8.5%	noncoding (401/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	2304948 =	45 (0.810)					noncoding (532/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTC  >  NC_000913_3_bme_pgi/2304674‑2304945                                                                                                                                                |                                                                                                                                 gACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGTATGTTGGATAAGGCGGTTACGCCGCATCCCGCAACCAACGTCCGCGCCGGTTGCCTGATGCGACg                                                                                                                             >  1:894962/1‑149 (MQ=11)   cATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTACACCCCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCAACCCGGTTGCCTAATCCGACGCt                                                                                                                           >  2:409612/1‑149 (MQ=11)    aTCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCCACGTCCGAGCCGGTTGCCGGTTGGGACGCTg                                                                                                                          >  1:309740/1‑149 (MQ=255)     tCTAACGCCCAAGCCCGTTGCCAGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGAGATCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATACAACGTCCGGTCCGGTTGCCTGTTGCGACGCTgg                                                                                                                         >  2:824902/1‑149 (MQ=11)           gCCGAAGCCGGTGGCCTGATACGTGCCTGTCTCGTCTGAACAGGCCTACACCACTGTGAAGGGCTCCACCCCGTAGGTCGGACAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACTCTGGCGCGTc                                                                                                                   <  2:711931/149‑1 (MQ=11)           gCCCCATCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGCATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                                                                   <  1:268272/149‑1 (MQ=255)           gCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGTCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                                                                   <  1:762267/149‑1 (MQ=38)           gCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCGGGGGCGTc                                                                                                                   >  2:414677/1‑149 (MQ=255)            cccAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACCCCCCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGCGCCGGTTGCCTGATGCGACACTGGCCCGGCt                                                                                                                  >  2:68229/1‑149 (MQ=11)                                ctaCGCTGTCGCGTCTTACCAGGCCTACACCGCTGTGAAGTGCTGCATCCCCTAGGTTTGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtgt                                                                                              <  2:717334/147‑1 (MQ=14)                                             tCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTCGCCCCCTGCGAAGTGCTCCAcc                                                                                 >  2:709231/1‑149 (MQ=14)                                                            acCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                                                                                     >  2:87665/1‑130 (MQ=255)                                                            acCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                                                                                     <  1:87665/130‑1 (MQ=25)                                                             ctgCTGTGACGTGCTCCACCTCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTACGATCCGGATGCCTGATGCGACGATGGCGCGTCTTATCAGGCCTACACCGCTGTGACGTGCGCCACCCCATAGGTCGGATAAg                                                                 <  1:824902/147‑1 (MQ=14)                                                             ccGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAg                                                                 <  1:605959/149‑1 (MQ=255)                                                                cTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTCCCCCGCTGCGACGTGCTCCACCCCGTGGGTCGGATCAGGcc                                                              >  2:804485/1‑148 (MQ=14)                                                                 tgtgAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAGCCCGCTGTGGAGTGCTCCACCCCGTACGTCGGATAAgtccg                                                             >  2:409476/1‑145 (MQ=14)                                                                   tgAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGtg                                                           >  1:158887/1‑148 (MQ=255)                                                                           tCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCCACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCCCGTCTTATCAGGCCTACACCGCTGTGACGTGCTACGCCCCGTGGGTCGGACAAGGACGCTGCGCCGCa                                                   >  2:502014/1‑149 (MQ=14)                                                                             cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                                                                                     >  2:104900/1‑113 (MQ=255)                                                                             cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                                                                                     <  1:104900/113‑1 (MQ=255)                                                                             cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCAAGAACCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTACTCCACCCCGTAGGTCCGATAAGGCGGTTACGCCGCATc                                                 >  1:950866/1‑149 (MQ=11)                                                                               ccccGAAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCg                                               >  2:875106/1‑149 (MQ=255)                                                                                cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCAACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTACTCCACCCCGCAGGTGCGGTAAGGCGGTTACGCCACATccaa                                              >  2:317507/1‑147 (MQ=11)                                                                                  cGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACa                                            >  1:386669/1‑149 (MQ=255)                                                                                       gTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGCCATCTaa                                       >  1:604312/1‑149 (MQ=255)                                                                                       gTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTACCCCCCTGCGAAGTGCTCCACCCCGTAGGTCGGATCAGGCCGTCGCGCCACCCCCGACCTCTat                                       >  2:957418/1‑148 (MQ=14)                                                                                        ttGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTGCACCGCTGTGACGTGCCCCACCCCGTAGGTCGGATCAGGCGGTTACGCCGCATCCGACATCTAAc                                      >  1:283912/1‑149 (MQ=255)                                                                                         tGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACg                                     >  2:869938/1‑149 (MQ=39)                                                                                           gATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTAACGCCGCATACGACATCTAACGcc                                   <  1:869938/149‑1 (MQ=255)                                                                                                 gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt                                                                                                <  1:986624/82‑1 (MQ=39)                                                                                                 gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCCACATCTAACGCCCAAGcc                             >  2:903688/1‑149 (MQ=25)                                                                                                  cGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCg                            <  1:568016/149‑1 (MQ=34)                                                                                                       aCGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGa                                                                     <  1:122157/103‑1 (MQ=32)                                                                                                         gccgcATCCTACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCCCCCCGGAGGTCGGATAAGGCGGGTACGCCGCATCCGACGTCTCACGCCCAAGCGGGTTGcgc                     >  2:264501/1‑147 (MQ=11)                                                                                                             cATCCGACATCCCGCGTCCGAGGCGGTTGCCGGCTGCGGCGCTGGCGCGTCCTATCAGGCCTACACCGCTGCGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATg                 <  2:901593/149‑1 (MQ=11)                                                                                                                        cAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGgcg      >  1:972347/1‑149 (MQ=32)                                                                                                                        cAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGgcg      >  1:777397/1‑149 (MQ=32)                                                                                                                        cAACGTCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                                                                                           >  2:714663/1‑64 (MQ=9)                                                                                                                         aaCGTCCGAGACGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACAGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCCAGCCGCTTGCCTGATGCGCCGCTGgccc     >  2:338029/1‑147 (MQ=11)                                                                                                                            gTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTc  <  1:617002/149‑1 (MQ=31)                                                                                                                                                |                                                                                                                                 GACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTC  >  NC_000913_3_bme_pgi/2304674‑2304945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.