New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 4168341	33 (0.740)	6 (0.140)	6/266	5.0	17.7%	intergenic (+141/‑31)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
	?	NC_000913_3_bme_pgi	= 4168363	25 (0.600)					intergenic (+163/‑9)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCA  >  NC_000913_3_bme_pgi/4168197‑4168489                                                                                                                                                 |                                                                                                                                                     cttaccttaAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa                                                                                                                                                  >  1:728452/1‑149 (MQ=255)      cttaAAGAAGGTGCCTTTGTAGGGCTCACACAGATTGTCTGCTAGAAAGGTAAAAGCAAGGCGTTTACGCGTTGTGATTTAGTCCGAAGAGAACAACCCAGATCTCTTCCCATCACTGCACGCTCTCCCTACACGAAAATATCACGCaa                                                                                                                                             <  2:151808/149‑1 (MQ=9)       ttaAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                                                                            >  1:714305/1‑149 (MQ=255)        taAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCCCGCAAcg                                                                                                                                           >  2:74802/1‑149 (MQ=255)          aagaagCGGACTTTGTAGTGCTCACACAGATTGTCTGATAGAAACTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGACAATAAGGCCGTTCGCTTTCCATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgcg                                                                                                                                         <  2:624323/149‑1 (MQ=255)           agaagCGTACTGTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGTTAGTGAGTCTGACGAGAATAAGCCAGATCGCCTTCCATTAATGAAAGCTTACCCTACACGAAAATATCACGCAACGCGt                                                                                                                                        <  2:773155/149‑1 (MQ=14)            gaagCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTg                                                                                                                                       >  2:503019/1‑149 (MQ=255)                  tACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGc                                                                                                                                 >  1:415303/1‑149 (MQ=255)                    cTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCaa                                                                                                                               <  2:728452/149‑1 (MQ=255)                     ttttTAGTGCTCACACCGATTGTCTGATACCAAGTGAAACGCAAGACGTTTACGCGATAGGAGTGATAATGGAGAGAATAAGGCCGTTCGCTTTCTATTAGTGTAAGCTCACCCTACACGTACATATCCCGCACCGCGTGCTactacat                                                                                                                              >  2:3673/1‑143 (MQ=2)                          aGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCg                                                                                                                         >  2:648778/1‑149 (MQ=38)                           gTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                                        <  1:159251/149‑1 (MQ=37)                           gTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                                        <  2:461547/149‑1 (MQ=38)                           gTGCTCACACAGATCGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                                        <  1:554852/149‑1 (MQ=38)                             gCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgtgt                                                                                                                      <  2:251041/149‑1 (MQ=38)                               tCACACAGATTGGCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTcc                                                                                                                    <  2:225026/149‑1 (MQ=38)                                     aGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCg                                                                                                              >  1:112342/1‑149 (MQ=39)                                         tGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTa                                                                                                          <  1:774195/149‑1 (MQ=38)                                                 aGAAAGTGAAAAGCAAGGCATGGACTCTGTTTGAGTGAGGGTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTGACCCTACACGAAAATATCACGGAACGCGTGATAAGCGATTTTCGTGTCCCCTGCGTCTAGAGGCCCa                                                                                                  <  2:748629/149‑1 (MQ=11)                                                  gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAg                                                                                                 <  2:653028/149‑1 (MQ=33)                                                    aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag                                                                                                       >  2:783443/1‑141 (MQ=32)                                                    aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag                                                                                                       <  1:783443/141‑1 (MQ=32)                                                    aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGa                                                                                               <  1:692883/149‑1 (MQ=32)                                                       tGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGacac                                                                                            >  1:508710/1‑149 (MQ=32)                                                       tGAAAAGCAAGGCGGTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCGATTAATGAAAGCTCACCCTACACGAAAAGATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAAAGGCCCAGGacac                                                                                            >  2:683779/1‑149 (MQ=255)                                                         aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                                        <  2:154186/119‑1 (MQ=32)                                                         aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                                        >  1:154186/1‑119 (MQ=32)                                                          aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGc                                                                                         >  1:640595/1‑149 (MQ=31)                                                                             tttggAGTGAGGCTGAAGAGAATAAGGCCGGTCGCTTTCTATTAATGAAAGCTCACCCTACCCGAACATATCACGCAACGCGTGATAAGCCATTTTCGTTGCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAg                                                                      <  1:274603/146‑1 (MQ=1)                                                                                                                                         cacGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCGCAGGAGACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCCACCTTa          >  2:329715/1‑149 (MQ=9)                                                                                                                                            gAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAata       >  1:447167/1‑149 (MQ=32)                                                                                                                                            gAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCATTAGTCAAAAGGCCAAGGACTCTGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAATCGCCGCCCTTAata       >  1:385970/1‑149 (MQ=11)                                                                                                                                                 tatCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGACCTTTTACGGCGGTAACAGGGGTTCGAATCCCCTAGGGAACGCCACTTGCTGGTTTGTGAGGGAAAGTCGCCGACCTTAATGTCTCa  >  1:222637/1‑149 (MQ=11)                                                                                                                                                 |                                                                                                                                                     CTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCA  >  NC_000913_3_bme_pgi/4168197‑4168489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.