New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	699425 =	NA (NA)	4 (0.140)	4/274	3.8	NA	noncoding (1/98 nt)	RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_bme_pgi	2842453 =	NA (NA)					noncoding (31/79 nt)	REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GACCGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCG  >  NC_000913_3_bme_pgi/2842313‑2842600                                                                                                                                             |                                                                                                                                                    gACCGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGGTGCGGCGTGAACGCCTTATCCGGCCTACATGTc                                                                                                                                             >  1:22047/1‑149 (MQ=255)   ccGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGc                                                                                                                                           >  1:423813/1‑149 (MQ=255)     gTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTATGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCGACAAGtagacc                                                                                                                                         >  2:73629/1‑144 (MQ=255)         cgacgCAGGCAACGGTACGCTGACGCGGACGCGTAAGAACTAATTCTGTGGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAAc                                                                                                                                     <  1:417996/149‑1 (MQ=39)                 gCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGa                                                                                                                                >  1:178106/1‑146 (MQ=255)                 gCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGa                                                                                                                                <  2:178106/146‑1 (MQ=255)                   aaCGGTACGCTGACGCGCACGCTTAAGAAATCATTCTCGTGGTATAAGAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGCGACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGcc                                                                                                                           <  2:30607/149‑1 (MQ=39)                       gTACTCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAt                                                                                                                       <  1:454833/149‑1 (MQ=255)                       gTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTTTAAAAAAGCGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCACGAAGGCCCGAt                                                                                                                       >  2:264268/1‑149 (MQ=255)                           gCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagc                                                                                                                   >  1:432965/1‑149 (MQ=255)                               aCGCGCACGCGTAAGAAATCAGTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGCCGTTGACGGTTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcag                                                                                                               <  1:238906/149‑1 (MQ=255)                                cgcgAACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcagc                                                                                                              <  1:180364/149‑1 (MQ=255)                                cgccCACGCGTAAGAAATCATGCTGGTGGTATAAAAAAGTGATGGCCAGCAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGAGGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGACCCATGAAGGCCCGATAagcgcagc                                                                                                              <  1:252412/149‑1 (MQ=39)                                                  cATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCa                                                                                            <  2:306951/149‑1 (MQ=255)                                                         gtggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCa                                                                                     <  2:510817/149‑1 (MQ=255)                                                               taAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGaa                                                                                                                                      >  2:213783/1‑94 (MQ=255)                                                               taAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGaa                                                                                                                                      <  1:213783/94‑1 (MQ=255)                                                               taAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCGTCGGGCAATTTAGCATTTGGCATCagag                                                                               >  1:222017/1‑149 (MQ=255)                                                               taAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCagag                                                                               >  1:742/1‑149 (MQ=255)                                                                             ccAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAAGCCCGATAAGCGCAGACCATCGGGCACTTTAGCATTTGCCATCAAAGCTGGTTCACACCAt                                                                 >  2:256691/1‑149 (MQ=38)                                                                              cAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCATAGCTGGTTCACCCCATc                                                                >  2:10427/1‑149 (MQ=255)                                                                                        gAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATcc                                                      >  1:212499/1‑149 (MQ=255)                                                                                        gAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATcc                                                      <  2:432965/149‑1 (MQ=255)                                                                                              ttAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTcc                                                >  2:197920/1‑149 (MQ=255)                                                                                                 gagTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGa                                             >  2:28575/1‑149 (MQ=255)                                                                                                       gTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCCTAGGGCGATTTAGCATTTGCAATGAGAGCTGGTTCACCCCATCAAAAAAATACCTGTCATGATTCGtt                                       >  1:474982/1‑149 (MQ=37)                                                                                                         aaCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTaa                                     <  1:301781/149‑1 (MQ=255)                                                                                                                    ataaggcgTTCACGCCGCATCCGGCCTACATGTCGCAAGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGTGATCACAACTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAactac                          >  1:258432/5‑149 (MQ=255)                                                                                                                      gcggcgTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTActc                        <  1:108819/149‑1 (MQ=255)                                                                                                                             gAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTcc                 <  1:197920/149‑1 (MQ=255)                                                                                                                                       tCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGAACATAAAGTTTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACt       <  1:394514/149‑1 (MQ=255)                                                                                                                                          ggCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAAGTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTgcg    <  1:462799/149‑1 (MQ=255)                                                                                                                                            ccTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCCGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACCCTTCTTCCCCCGCCAACTCcgcg  >  2:359719/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                    GACCGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCG  >  NC_000913_3_bme_pgi/2842313‑2842600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.