New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2635831 =	32 (1.060)	3 (0.110)	3/262	4.2	9.2%	intergenic (‑17/+53)	yfgJ/der	DUF1407 family protein/GTPase; multicopy suppressor of ftsJ
	?	NC_000913_3_bme_pgi	2635863 =	30 (1.090)					intergenic (‑49/+21)	yfgJ/der	DUF1407 family protein/GTPase; multicopy suppressor of ftsJ
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAGCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGGTTTTCCCCTTCTTTGAACTGAATACGAATCGGCGATC  >  NC_000913_3_bme_pgi/2635717‑2636008                                                                                                                                                   |                                                                                                                                                  agagCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTGTGGACAATGCAGTGCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGa                                                                                                                                                 <  1:18090/149‑1 (MQ=255)                         ccGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCAACATAAATAGAGGGAATGGCAGATAAAATACTTACGGATAAttattt                                                                                                                         >  1:502582/1‑149 (MQ=255)                               gATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGCAATTGTGGACAATGAAGATCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTAttttt                                                                                                                   >  1:345322/1‑149 (MQ=255)                                aTCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTc                                                                                                                  <  1:168131/149‑1 (MQ=255)                                     cAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGAt                                                                                                             <  1:404525/149‑1 (MQ=255)                                           gcATGGCCGTTATCCTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCtt                                                                                                       >  1:235008/1‑149 (MQ=255)                                                gCCGTTATCCTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATTTGCTtcatca                                                                                                  >  2:231664/1‑149 (MQ=255)                                                         cTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGAc                                                                                               <  1:481686/143‑1 (MQ=255)                                                         cTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGAc                                                                                               >  2:481686/1‑143 (MQ=255)                                                           gATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGt                                                                                       >  2:534835/1‑149 (MQ=255)                                                            aTCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTAGGGAGAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGtt                                                                                      >  1:310369/1‑149 (MQ=255)                                                               aaccacaTGTTGACATGTCGGACCATGCTGTTACATATGAATTCCTCCGTTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGTTGTGCTTCATCAGACGCTTACGTTTAc                                                                                   <  2:265445/146‑1 (MQ=255)                                                                       gCTGACATTGGGTACAATGCAGTTCCAAATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCATATAAAAGACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTgg                                                                           <  1:256937/149‑1 (MQ=255)                                                                        cTGACATTATGGAAAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTggg                                                                          <  1:475548/149‑1 (MQ=255)                                                                          gACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGtt                                                                        >  1:85051/1‑149 (MQ=255)                                                                           accttGTGGACAATTCAGTTCCATATTAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAGAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTg                                                                       <  1:343184/146‑1 (MQ=255)                                                                                  ggACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAg                                                                <  1:127190/149‑1 (MQ=255)                                                                                  ggACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAg                                                                <  2:217119/149‑1 (MQ=255)                                                                                   gACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAgg                                                               <  1:276906/149‑1 (MQ=255)                                                                                   gACAATGCAGTTCCACATGAACTCCTCCGGTAGCCATTTCATATACCCTGATAGAGTGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAgg                                                               <  1:206558/149‑1 (MQ=255)                                                                                           aGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTAc                                                                                   <  1:83043/121‑1 (MQ=255)                                                                                           aGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTAc                                                                                   >  2:83043/1‑121 (MQ=255)                                                                                            gTTCCATATGAATTCCCCCGGTAGCCATTCCCTCGACATTCATAGAGGGAATGGCAGATATATTACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGc                                                      <  2:86362/149‑1 (MQ=255)                                                                                                  tatGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTc                                                >  1:116297/1‑149 (MQ=255)                                                                                                   atGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCg                                               >  2:120581/1‑149 (MQ=255)                                                                                                     gAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACGTACGGATAAATATTTATTTTTCTTGATTTGCTTCTTCAGACCCTAACGTTTCCGCATCTGGCTTGGCGTCAGGGTGTTACGCTTATTccac                                             >  2:38786/1‑146 (MQ=255)                                                                                                       aTTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATa                                           >  1:74309/1‑149 (MQ=255)                                                                                                           ctccGGTCGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTAGGTTGGCGTCAGGGTGTTTCGCTTATTCGCATACgag                                       >  1:496932/1‑147 (MQ=255)                                                                                                                                cATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGGTTTTCCCCTTCTTTGAACTGa                  <  1:119153/149‑1 (MQ=255)                                                                                                                                  ttCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGGTTTTCCCCTTCTTTGAACTGAAt                >  1:351278/1‑149 (MQ=255)                                                                                                                                    cgtAGAGTGAATGGCAGATTACATACTTACGGATAATTATTTATTTTTCTCGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCTCATACGTGTTTTCCCCTTCTTTGAACTGAATAc              <  2:217575/147‑1 (MQ=255)                                                                                                                                       agagGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGGTTTTCCCCTTCTTTGAACTGAATACGaa           >  1:304783/1‑149 (MQ=255)                                                                                                                                          gggAATGGCATATAAAATACTTACCGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGGTTTTCCCCTTCTTTGAACTGAAGACGAATCg        <  1:231664/149‑1 (MQ=255)                                                                                                                                                ggCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATTTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGGTTTTCCCCTTCTTTGAACTGAATACGAATCGGCGATc  <  1:109974/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  AGAGCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTGTGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGGTTTTCCCCTTCTTTGAACTGAATACGAATCGGCGATC  >  NC_000913_3_bme_pgi/2635717‑2636008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.