New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1987843 =	16 (0.530)	4 (0.140)	4/272	3.8	19.0%	intergenic (‑85/+30)	yecJ/azuC	DUF2766 family protein/acid‑inducible small membrane‑associated protein
	?	NC_000913_3_bme_pgi	1987874 =	19 (0.660)					coding (86/87 nt)	azuC	acid‑inducible small membrane‑associated protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAACCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGT  >  NC_000913_3_bme_pgi/1987709‑1987989                                                                                                                                       |                                                                                                                                                   gcaaCCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCCGGACCCAAAAAAACATGcc                                                                                                                                      >  1:204379/1‑149 (MQ=255)              aaaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGttttt                                                                                                                         >  1:39556/1‑149 (MQ=255)                    aTTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACCCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTAt                                                                                                                   <  1:180128/149‑1 (MQ=255)                                     aGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTgg                                                                                                  <  1:271581/149‑1 (MQ=255)                                                    gTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCGTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGCGCATTTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGaa                                                                                   <  2:358642/149‑1 (MQ=255)                                                          tCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACATCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCtt                                                                             >  2:167211/1‑149 (MQ=255)                                                                     ttttGAAAGCCGTTATAGTAGCGACTGCACATCTTCAGCGATAGTCACATCCACCGTCATGAGGACACAAAAAAACCTGCCGGAGCAGGTCATTGCTTTTGGGGACTTATTGCTTGGCGGTACGTCTTTGAACGTCTGGCAATCGTGAt                                                                  >  1:419965/1‑149 (MQ=255)                                                                          aaaGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAAc                                                             >  1:493709/1‑149 (MQ=255)                                                                                 ttATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACATCTTGCAATATTTATTGAACATACttt                                                      >  2:475718/1‑149 (MQ=255)                                                                                                          gCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATcgc                             <  1:247244/149‑1 (MQ=255)                                                                                                                    caTCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGa                   <  2:479167/149‑1 (MQ=255)                                                                                                                     acccACCTTCATCAGGACACAAACAAACCTGCCGGCGCAGGTTTTTTGTTATCGCAACATATTGCCTGGCGGTACTTCTTTGAACTTCTTGCAATAGTTATTGAACATTCTTTTCAGTATTTTGCGCAGTTTCATCGCGGCACTCCGAc                  <  2:465574/147‑1 (MQ=255)                                                                                                                     aTCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAAAATACTTTTCAGGATTTTGCGCAGTTTCATCCCGGCCCCCCGAc                  >  2:126371/1‑149 (MQ=255)                                                                                                                             tcatcaGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATa                                                                       <  1:97631/88‑1 (MQ=255)                                                                                                                             tcatcaGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATa                                                                       >  2:97631/1‑88 (MQ=255)                                                                                                                                     acacAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGCCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgt  >  2:298648/1‑149 (MQ=255)                                                                                                                                       |                                                                                                                                                   GCAACCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCCGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGT  >  NC_000913_3_bme_pgi/1987709‑1987989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.