New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 375117	35 (1.150)	4 (0.140)	4/274	3.8	8.6%	noncoding (188/436 nt)	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
	?	NC_000913_3_bme_pgi	= 375287	52 (1.800)					noncoding (358/436 nt)	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC  >  NC_000913_3_bme_pgi/374970‑375252                                                                                                                                                    |                                                                                                                                        cGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCCGATCAGATGCGTTAGCGTCGCATCAGGCa                                                                                                                                        >  1:499835/1‑149 (MQ=255)    gagaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGAGGGAATTTGTAGGCCTGATAAGACGCGTTGGCGTCGCATCCGGCATCt                                                                                                                                     >  2:335718/1‑149 (MQ=255)     agaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCC‑GCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc                                                                                                                                   <  1:401222/149‑1 (MQ=25)                gTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGGGTGAACGCCTTATCCGGCCTACGGATAGCGCGGGAATTTGTAGGCCTGATACAACGCGTTGGCGTCGCCTCAGGCATCTGATCACGACTGc                                                                                                                         >  2:101635/1‑149 (MQ=11)                 tCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGcc                                                                                                                        >  1:478048/1‑149 (MQ=37)                 tCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTAATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGcc                                                                                                                        >  1:206854/1‑149 (MQ=25)                   tGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTGGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTCCGCACGACTGCCgg                                                                                                                      >  1:132201/1‑149 (MQ=21)                     aTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGAt                                                                                                                    >  2:350648/1‑149 (MQ=35)                                   cGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGcc                                                                                                      >  1:80429/1‑149 (MQ=38)                                       gCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTAt                                                                                                  >  2:510889/1‑149 (MQ=38)                                        cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATc                                                                                                 >  1:213934/1‑149 (MQ=38)                                         aTCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATcc                                                                                                >  2:346514/1‑149 (MQ=38)                                            aGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGGCGTACACGCCTGATCCGGc                                                                                             >  2:202414/1‑149 (MQ=255)                                             ggCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCGTATCCCGcc                                                                                            >  2:446789/1‑149 (MQ=255)                                                 tCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg                                                                                        <  1:508666/149‑1 (MQ=38)                                                       cACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACGGGTGgc                                                                                  >  1:279330/1‑149 (MQ=255)                                                        aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTCGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCCTCTCCGGCATACgtggaccg                                                                                 >  2:121675/1‑142 (MQ=11)                                                                       ggcgTGACCGCCTTATCCGGGCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc                                                                  <  1:415308/149‑1 (MQ=255)                                                                       ggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc                                                                  <  2:80429/149‑1 (MQ=255)                                                                        gcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGACGTGAACGCCTTATCCGGCCTACGGATGGCGCGCGCATTTATCGGcc                                                                 >  2:120774/1‑149 (MQ=11)                                                                                ctcTTATCCGGCCCACGGATGGCGCGGCAATTGGCAGGCCCGATAAGACGCGTCAGCGGCGCATCAGCCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTCATAAGa                                                         <  2:187259/147‑1 (MQ=14)                                                                                   ttATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGTCGCAAGAATTTGTAGGCCTGATAAAAcgc                                                      >  2:481636/1‑149 (MQ=255)                                                                                   ttATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAAACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCGTATCCGGGCTACGGGTGGCGCGGGAATTAGTAGGCCTGATAAGAcgc                                                      >  1:408777/1‑149 (MQ=14)                                                                                            cTACGGATGGCTCGGGAAGTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                             <  2:174248/149‑1 (MQ=255)                                                                                            cTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                             <  2:357840/149‑1 (MQ=255)                                                                                             tACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGAGAGCATTTGTATGCCTGATAAGACGCGTTAGCGTCg                                            >  1:296375/1‑149 (MQ=255)                                                                                                 gATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                                        >  1:307724/1‑149 (MQ=255)                                                                                                  aTGGGGCGGGAATTTGGAGGCGTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGCGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCa                                       <  2:364562/149‑1 (MQ=255)                                                                                                   tGGCCCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAg                                      <  1:37343/149‑1 (MQ=255)                                                                                                    ggCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAgg                                     <  1:291525/149‑1 (MQ=255)                                                                                                    ggCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGACTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAgg                                     <  1:285487/149‑1 (MQ=255)                                                                                                                        tGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCTGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCgg                 >  2:193055/1‑149 (MQ=25)                                                                                                                            aaGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATgc             <  1:193055/149‑1 (MQ=35)                                                                                                                                 gcgTTAGCGTCGCATCAGGCCTATGAGCTGATCGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCCTCTGCCCCCGACTGCCGGATGCGGCGt        >  2:519550/1‑149 (MQ=11)                                                                                                                                       gCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGc  <  1:346514/149‑1 (MQ=38)                                                                                                                                                    |                                                                                                                                        CGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC  >  NC_000913_3_bme_pgi/374970‑375252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.