mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 34.5% | 118.4 / 82.2 | 85 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 34.1% | 94.9 / 68.8 | 86 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 32.5% | 104.6 / 59.2 | 83 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 21.7% | 105.3 / 28.3 | 69 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 236 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 1096961 = | 73 (1.290) | 6 (0.160) +47 bp |
5/184 | 5.2 | 11.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_bme_pgi | 1097243 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_bme_pgi | 1096961 = | 73 (1.290) | 6 (0.160) +47 bp |
5/184 | 5.2 | 13.6% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_bme_pgi | 1097062 = | 43 (0.760) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_bme_pgi | = 4542691 | 41 (0.720) | 11 (0.210) | 9/260 | 5.3 | 21.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | = 4542987 | 43 (0.810) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | 4542683 = | 38 (0.670) | 9 (0.170) | 7/260 | 6.1 | 18.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | 4542997 = | 43 (0.810) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | 4150405 = | 49 (0.870) | 7 (0.130) | 6/260 | 6.5 | 13.4% | intergenic (‑140/+42) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase |
| ? | NC_000913_3_bme_pgi | 4150433 = | 45 (0.850) | intergenic (‑168/+14) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase | |||||
| * | ? | NC_000913_3_bme_pgi | = 4027456 | 79 (1.400) | 5 (0.100) +TTGGTGCCGGATCGGTAGA |
5/240 | 6.6 | 6.8% | noncoding (135/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4027601 | NA (NA) | noncoding (280/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | = 377420 | 77 (1.360) | 5 (0.100) +TCTACCGATCCGGCACCAA |
5/240 | 6.6 | 6.9% | noncoding (86/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4027456 | 79 (1.400) | noncoding (135/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | 224957 = | NA (NA) | 6 (0.110) | 6/266 | 6.7 | NA | noncoding (1187/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 224974 = | NA (NA) | noncoding (1204/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | 3270070 = | 46 (0.810) | 5 (0.100) | 5/258 | 7.0 | 10.8% | intergenic (+468/+146) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_bme_pgi | 3270094 = | 40 (0.760) | intergenic (+492/+122) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_bme_pgi | 381681 = | NA (NA) | 5 (0.090) | 5/260 | 7.0 | NA | coding (331/366 nt) coding (8/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | NC_000913_3_bme_pgi | 381753 = | NA (NA) | coding (80/906 nt) | insD1 | IS2 transposase TnpB | |||||